Russell L. Malmberg

According to our database1, Russell L. Malmberg authored at least 28 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




A Multi-hypothesis Learning Algorithm for Human and Mouse miRNA Target Prediction.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2019

Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex.
J. Bioinform. Comput. Biol., 2018

Efficient Learning of Optimal Markov Network Topology with k-Tree Modeling.
CoRR, 2018

Genome-wide identification and evolutionary analysis of long non-coding RNAs in cereals.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

Accurate prediction of RNA nucleotide interactions with backbone <i>k</i>-tree model.
Bioinform., 2015

Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling.
Proceedings of the Language and Automata Theory and Applications, 2014

Ab initio Prediction of RNA Nucleotide Interactions with Backbone <i>k</i>-Tree Model.
Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

Patterns of Chromatin-Modifications Discriminate Different Genomic Features in <i>Arabidopsis</i>.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

Protein Closed Loop Prediction from Contact Probabilities.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.
BMC Bioinform., 2012

TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.
Bioinform., 2012

Analyzing Modular RNA Structure reveals Low Global Structural Entropy in microRNA Sequence.
J. Bioinform. Comput. Biol., 2011

TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes.
Int. J. Bioinform. Res. Appl., 2011

Simultaneous Prediction of RNA Secondary Structure and Helix Coaxial Stacking.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

RNApasta: a tool for analysis of RNA structural alignments.
Int. J. Bioinform. Res. Appl., 2010

RNATOPS-W: a web server for RNA structure searches of genomes.
Bioinform., 2009

Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Bioinform., 2008

Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Int. J. Bioinform. Res. Appl., 2006

Rapid <i>ab initio</i> RNA Folding Including Pseudoknots Via Graph Tree Decomposition.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

Phylogenetic Network Inferences Through Efficient Haplotyping.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

Learning the Parameters of Stochastic Grammar Models for RNA Structures with Pseudoknots.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Profiling and Searching for RNA Pseudoknot Structures in Genomes.
Trans. Comp. Sys. Biology, 2005

RNA Structural Homology Search with a Succinct Stochastic Grammar Model.
J. Comput. Sci. Technol., 2005

Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment.
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005

Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
Bioinform., 2004

Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003