Ruth E. Baker

According to our database, Ruth E. Baker authored at least 27 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Efficient multifidelity likelihood-free Bayesian inference with adaptive computational resource allocation.

Thomas P. Prescott, David J. Warne, Ruth E. Baker

J. Comput. Phys., January, 2024

2022

Rapid Bayesian Inference for Expensive Stochastic Models.

David J. Warne, Ruth E. Baker, Matthew J. Simpson

J. Comput. Graph. Stat., January, 2022

Efficient Bayesian inference for mechanistic modelling with high-throughput data.

Simon Martina Perez, Heba Sailem, Ruth E. Baker

PLoS Comput. Biol., 2022

Multifidelity multilevel Monte Carlo to accelerate approximate Bayesian parameter inference for partially observed stochastic processes.

David J. Warne, Thomas P. Prescott, Ruth E. Baker, Matthew J. Simpson

J. Comput. Phys., 2022

2021

Multifidelity Approximate Bayesian Computation with Sequential Monte Carlo Parameter Sampling.

Thomas P. Prescott, Ruth E. Baker

SIAM/ASA J. Uncertain. Quantification, 2021

Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains.

Bartosz J. Bartmanski, Ruth E. Baker

J. Comput. Appl. Math., 2021

Travelling waves in a free boundary mechanobiological model of an epithelial tissue.

Ryan J. Murphy, Pascal R. Buenzli, Ruth E. Baker, Matthew J. Simpson

Appl. Math. Lett., 2021

2020

Biologically-informed neural networks guide mechanistic modeling from sparse experimental data.

John H. Lagergren, John T. Nardini, Ruth E. Baker, Matthew J. Simpson, Kevin B. Flores

PLoS Comput. Biol., 2020

Multifidelity Approximate Bayesian Computation.

Thomas P. Prescott, Ruth E. Baker

SIAM/ASA J. Uncertain. Quantification, 2020

Pakman: a modular, efficient and portable tool for approximate Bayesian inference.

Thomas Pak, Ruth E. Baker, Joe Pitt-Francis

J. Open Source Softw., 2020

Chaste: Cancer, Heart and Soft Tissue Environment.

Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan

J. Open Source Softw., 2020

StoSpa2: A C++ software package for stochastic simulations of spatially extended systems.

Bartosz J. Bartmanski, Ruth E. Baker

J. Open Source Softw., 2020

Global Dynamics of a Novel Delayed Logistic Equation Arising from Cell Biology.

Ruth E. Baker, Gergely Röst

J. Nonlinear Sci., 2020

2019

Displacement of Transport Processes on Networked Topologies.

Daniel B. Wilson, Ruth E. Baker, Francis G. Woodhouse

SIAM J. Appl. Math., 2019

2018

The impact of temporal sampling resolution on parameter inference for biological transport models.

Jonathan U. Harrison, Ruth E. Baker

PLoS Comput. Biol., 2018

Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches.

Christopher Lester, Christian A. Yates, Ruth E. Baker

J. Comput. Phys., 2018

Multilevel rejection sampling for approximate Bayesian computation.

David J. Warne, Ruth E. Baker, Matthew J. Simpson

Comput. Stat. Data Anal., 2018

2017

Numerical Analysis of the Immersed Boundary Method for Cell-Based Simulation.

Fergus R. Cooper, Ruth E. Baker, Alexander G. Fletcher

SIAM J. Sci. Comput., 2017

Impact of implementation choices on quantitative predictions of cell-based computational models.

Jochen Kursawe, Ruth E. Baker, Alexander G. Fletcher

J. Comput. Phys., 2017

Turing's theory of morphogenesis.

Thomas E. Woolley, Ruth E. Baker, Philip K. Maini

Proceedings of the Turing Guide., 2017

Turing's Theory of Morphogenesis: Where We Started, Where We Are and Where We Want to Go.

Thomas E. Woolley, Ruth E. Baker, Philip K. Maini

Proceedings of the Incomputable: Journeys Beyond the Turing Barrier, 2017

2016

Turing's Theory of Developmental Pattern Formation.

Philip K. Maini, Thomas E. Woolley, Eamonn A. Gaffney, Ruth E. Baker

Proceedings of the Once and Future Turing: Computing the World, 2016

2015

Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces.

Jochen Kursawe, Pavel A. Brodskiy, Jeremiah J. Zartman, Ruth E. Baker, Alexander G. Fletcher

PLoS Comput. Biol., 2015

2013

A Modified Oster-Murray-Harris Mechanical Model of Morphogenesis.

Benjamin L. Vaughan Jr., Ruth E. Baker, David Kay, Philip K. Maini

SIAM J. Appl. Math., 2013

Novel Methods for Analysing Bacterial Tracks Reveal Persistence in <i>Rhodobacter sphaeroides</i>.

Gabriel Rosser, Alexander G. Fletcher, David A. Wilkinson, Jennifer A. de Beyer, Christian A. Yates, Judith P. Armitage, Philip K. Maini, Ruth E. Baker

PLoS Comput. Biol., 2013

Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies.

Katrina K. Treloar, Matthew J. Simpson, Parvathi Haridas, Kerry J. Manton, David I. Leavesley, Donald L. S. McElwain, Ruth E. Baker

BMC Syst. Biol., 2013

2012

Modelling Hair Follicle Growth Dynamics as an Excitable Medium.

Philip J. Murray, Philip K. Maini, Maksim V. Plikus, Cheng-Ming Chuong, Ruth E. Baker

PLoS Comput. Biol., 2012