David Gavaghan

According to our database1, David Gavaghan authored at least 40 papers between 2000 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 



On csauthors.net:


Chaste: Cancer, Heart and Soft Tissue Environment.
J. Open Source Softw., 2020

Model Evidence with Fast Tree Based Quadrature.
CoRR, 2020

Probabilistic Inference on Noisy Time Series (PINTS).
CoRR, 2018

Comparing individual-based approaches to modelling the self-organization of multicellular tissues.
PLoS Comput. Biol., 2017

The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt.
PLoS Comput. Biol., 2017

Ten simple rules for surviving an interdisciplinary PhD.
PLoS Comput. Biol., 2017

Hierarchical Bayesian Modelling of Variability and Uncertainty in Synthetic Action Potential Traces.
Proceedings of the Computing in Cardiology, CinC 2016, Vancouver, 2016

Ten Simple Rules for a Successful Cross-Disciplinary Collaboration.
PLoS Comput. Biol., 2015

Review of automatic pulmonary lobe segmentation methods from CT.
Comput. Medical Imaging Graph., 2015

Ten Simple Rules for Effective Computational Research.
PLoS Comput. Biol., 2014

The Free Energy Landscape of Dimerization of a Membrane Protein, NanC.
PLoS Comput. Biol., 2014

Model Composition for Biological Mathematical Systems.
Proceedings of the MODELSWARD 2014 - Proceedings of the 2nd International Conference on Model-Driven Engineering and Software Development, Lisbon, Portugal, 7, 2014

Chaste: An Open Source C++ Library for Computational Physiology and Biology.
PLoS Comput. Biol., 2013

A local sensitivity analysis method for developing biological models with identifiable parameters: Application to cardiac ionic channel modelling.
Future Gener. Comput. Syst., 2013

Contrast-Independent Curvilinear Structure Detection in Biomedical Images.
IEEE Trans. Image Process., 2012

A Bidomain Model of the Ventricular Specialized Conduction System of the Heart.
SIAM J. Appl. Math., 2012

A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath.
PLoS Comput. Biol., 2012

Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems.
Proceedings of the 21st IEEE International Workshop on Enabling Technologies: Infrastructure for Collaborative Enterprises, 2012

Modular mathematical modelling of biological systems.
Proceedings of the 2012 Spring Simulation Multiconference, 2012

Pulmonary lobe segmentation from CT images using fissureness, airways, vessels and multilevel B-splines.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Resolving the Three-Dimensional Histology of the Heart.
Proceedings of the Computational Methods in Systems Biology, 2012

Regionally Optimised Mathematical Models of Cardiac Myocyte Orientation in Rat Hearts.
Proceedings of the Functional Imaging and Modeling of the Heart, 2011

A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L-type Calcium Channel Modelling.
Proceedings of the Sixth International Conference on e-Science, 2010

Electrochemical Parameter Optimization Using Scientific Workflows.
Proceedings of the Sixth International Conference on e-Science, 2010

On the Secure Sharing and Aggregation of Data to Support Systems Biology Research.
Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

Chaste: A test-driven approach to software development for biological modelling.
Comput. Phys. Commun., 2009

Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model.
Proceedings of the Functional Imaging and Modeling of the Heart, 2009

Predicting Tumor Location by Modeling the Deformation of the Breast.
IEEE Trans. Biomed. Eng., 2008

Incorporating Local Ca2<sup>+</sup> Dynamics into Single Cell Ventricular Models.
Proceedings of the Computational Science, 2008

High Performance Computer Simulations of Cardiac Electrical Function Based on High Resolution MRI Datasets.
Proceedings of the Computational Science, 2008

Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling.
Future Gener. Comput. Syst., 2007

An Iterative Method for Registration of High-Resolution Cardiac Histoanatomical and Mri Images.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

A Prototype Infrastructure for the Secure Aggregation of Imaging and Pathology Data for Colorectal Cancer Care.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Oxygen transport to muscle tissue where regions of low oxygen tension exist.
Math. Comput. Model., 2005

Challenges of Ultra Large Scale Integration of Biomedical Computing Systems.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

Predicting Tumour Location by Simulating Large Deformations of the Breast Using a 3D Finite Element Model and Nonlinear Elasticity.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

The Dynamics and Pinning of a Spike for a Reaction-Diffusion System.
SIAM J. Appl. Math., 2002

Climateprediction.net: Design Principles for Publicresource Modeling Research.
Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2002

XML for Visualization.
Proceedings of the Web and the Grid: from e-science to e-business. EuroWeb 2002 Conference, 2002

Discovering the Structure of Partial Differential Equations from Example Behaviour.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000