Sacha A. F. T. van Hijum

According to our database, Sacha A. F. T. van Hijum authored at least 21 papers between 2003 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

Microbial bioinformatics for food safety and production.

Wynand Alkema, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum

Briefings Bioinform., 2016

2015

CiVi: circular genome visualization with unique features to analyze sequence elements.

Lex Overmars, Sacha A. F. T. van Hijum, Roland J. Siezen, Christof Francke

Bioinform., 2015

2013

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

Wouter G. Touw, Jumamurat R. Bayjanov, Lex Overmars, Lennart Backus, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum

Briefings Bioinform., 2013

2011

Comparison of Multiple Weighted Hierarchies: Visual Analytics for Microbe Community Profiling.

Kasper Dinkla, Michel A. Westenberg, H. M. Timmerman, Sacha A. F. T. van Hijum, Jarke J. van Wijk

Comput. Graph. Forum, 2011

FACIL: Fast and Accurate Genetic Code Inference and Logo.

Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen

Bioinform., 2011

2010

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.

Michel A. Westenberg, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum

Bioinform., 2010

PanCGHweb: a web tool for genotype calling in pangenome CGH data.

Jumamurat R. Bayjanov, Roland J. Siezen, Sacha A. F. T. van Hijum

Bioinform., 2010

2009

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

Rutger W. W. Brouwer, Sacha A. F. T. van Hijum, Oscar P. Kuipers

Bioinform., 2009

MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.

Evert-Jan Blom, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum

Bioinform., 2009

2008

Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context.

Michel A. Westenberg, Sacha A. F. T. van Hijum, Oscar P. Kuipers, Jos B. T. M. Roerdink

Comput. Graph. Forum, 2008

Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons.

Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers

BMC Bioinform., 2008

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.

Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J. Hofstede, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers

BMC Bioinform., 2008

The relative value of operon predictions.

Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum

Briefings Bioinform., 2008

Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data.

Michel A. Westenberg, Sacha A. F. T. van Hijum, Andrzej T. Lulko, Oscar P. Kuipers, Jos B. T. M. Roerdink

Proceedings of the Visualization in Medicine and Life Sciences., 2008

2007

FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.

Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers

Bioinform., 2007

2006

BAGEL: a web-based bacteriocin genome mining tool.

Anne de Jong, Sacha A. F. T. van Hijum, Jetta J. E. Bijlsma, Jan Kok, Oscar P. Kuipers

Nucleic Acids Res., 2006

SIMAGE: simulation of DNA-microarray gene expression data.

Casper J. Albers, Ritsert C. Jansen, Jan Kok, Oscar P. Kuipers, Sacha A. F. T. van Hijum

BMC Bioinform., 2006

2005

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.

Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, Jan Kok

Nucleic Acids Res., 2005

2004

Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.

Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen

Bioinform., 2004

2003

PreP: gene expression data pre-processing.

Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles

Bioinform., 2003

UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.

Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Jan Kok, Oscar P. Kuipers

Bioinform., 2003