Bas E. Dutilh

According to our database, Bas E. Dutilh authored at least 15 papers between 2007 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.

Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert A. Edwards, Francisco Rodríguez-Valera

Patterns, 2021

Finding functional associations between prokaryotic virus orthologous groups: a proof of concept.

Nikolaos Pappas, Bas E. Dutilh

BMC Bioinform., 2021

OGRE: Overlap Graph-based metagenomic Read clustEring.

Marleen Balvert, Xiao Luo, Ernestina Hauptfeld, Alexander Schönhuth, Bas E. Dutilh

Bioinform., 2021

2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

A Drug Recommendation System (Dr.S) for cancer cell lines.

Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M. Deist, Christine Eyler, Bas E. Dutilh, Alexander Schönhuth, David Craft

CoRR, 2019

Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype.

Bojian Yin, Marleen Balvert, Rick A. A. van der Spek, Bas E. Dutilh, Sander M. Bohté, Jan Veldink, Alexander Schönhuth

Bioinform., 2019

2018

Metagenomic read clustering based on overlap graphs.

Marleen Balvert, Alexander Schönhuth, Bas E. Dutilh

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2016

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.

Genivaldo Gueiros Z. Silva, Kevin T. Green, Bas E. Dutilh, Robert A. Edwards

Bioinform., 2016

2015

Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.

Qingzhen Hou, Bas E. Dutilh, Martijn A. Huynen, Jaap Heringa, K. Anton Feenstra

BMC Bioinform., 2015

2013

Combining de novo and reference-guided assembly with scaffold_builder.

Genivaldo Gueiros Z. Silva, Bas E. Dutilh, T. David Matthews, Keri Elkins, Robert Schmieder, Elizabeth A. Dinsdale, Robert A. Edwards

Source Code Biol. Medicine, 2013

2012

Reference-independent comparative metagenomics using cross-assembly: crAss.

Bas E. Dutilh, Robert Schmieder, James Nulton, Ben Felts, Peter Salamon, Robert A. Edwards, John Mokili

Bioinform., 2012

2011

FACIL: Fast and Accurate Genetic Code Inference and Logo.

Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen

Bioinform., 2011

2009

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.

Bas E. Dutilh, Martijn A. Huynen, Marc Strous

Bioinform., 2009

2008

Signature, a web server for taxonomic characterization of sequence samples using signature genes.

Bas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen

Nucleic Acids Res., 2008

2007

Assessment of phylogenomic and orthology approaches for phylogenetic inference.

Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen

Bioinform., 2007