Oswaldo Trelles

According to our database1, Oswaldo Trelles authored at least 67 papers between 1994 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2020
PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy.
Bioinform., 2020

2018
Precise and Parallel Pairwise Metagenomic Comparisons.
J. Comput. Biol., 2018

mORCA: sailing bioinformatics world with mobile devices.
Bioinform., 2018

Analyzing the Differences Between Reads and Contigs When Performing a Taxonomic Assignment Comparison in Metagenomics.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

Workflows and Service Discovery: A Mobile Device Approach.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

2017
Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows.
Future Gener. Comput. Syst., 2017

Two level parallelism and I/O reduction in genome comparisons.
Clust. Comput., 2017

Pairwise and Incremental Multi-stage Alignment of Metagenomes: A New Proposal.
Proceedings of the Bioinformatics and Biomedical Engineering, 2017

Accelerating Exhaustive Pairwise Metagenomic Comparisons.
Proceedings of the Algorithms and Architectures for Parallel Processing, 2017

2016
Review: High-performance computing to detect epistasis in genome scale data sets.
Briefings Bioinform., 2016

A Framework for Accessible Cluster-Enabled Epistatic Analysis.
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016

Two-Level Parallelism to Accelerate Multiple Genome Comparisons.
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016

2015
Breaking the computational barriers of pairwise genome comparison.
BMC Bioinform., 2015

Mobile Access to On-line Analytic Bioinformatics Tools.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

Epistatic Analysis of Clarkson Disease.
Proceedings of the International Conference on Computational Science, 2015

Pairwise Genome Comparison Workflow in the Cloud Using Galaxy.
Proceedings of the International Conference on Computational Science, 2015

Computational Synteny Block: A framework to identify evolutionary events.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers.
Proceedings of the CLOSER 2014, 2014

2013
MAPI: a software framework for distributed biomedical applications.
J. Biomed. Semant., 2013

Out of Core Computation of HSPs for Large Biological Sequences.
Proceedings of the Advances in Computational Intelligence, 2013

Bio-Cirrus: A Framework for Running Legacy Bioinformatics Applications with Cloud Computing Resources.
Proceedings of the Advances in Computational Intelligence, 2013

2012
Enabling Large-Scale Bioinformatics Data Analysis with Cloud Computing.
Proceedings of the 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, 2012

2011
MAPI: towards the integrated exploitation of bioinformatics Web Services.
BMC Bioinform., 2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant., 2011

Using Graphics Processors for a High Performance Normalization of Gene Expressions.
Proceedings of the 13th IEEE International Conference on High Performance Computing & Communication, 2011

2010
MOWServ: a web client for integration of bioinformatic resources.
Nucleic Acids Res., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant., 2010

jORCA: easily integrating bioinformatics Web Services.
Bioinform., 2010

Statistical Significance for NGS Reads Similarities.
Proceedings of the Bioinformatics for Personalized Medicine, 2010

jORCA and Magallanes Sailing Together towards Integration of Web Services.
Proceedings of the Bioinformatics for Personalized Medicine, 2010

Workflow Composition and Enactment Using jORCA.
Proceedings of the Leveraging Applications of Formal Methods, Verification, and Validation, 2010

Web service catalogue for Biomedical Grid infrastructure.
Proceedings of the Healthgrid Applications and Core Technologies, 2010

2009
Magallanes: a web services discovery and automatic workflow composition tool.
BMC Bioinform., 2009

PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data.
BMC Bioinform., 2009

2008
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons.
BMC Bioinform., 2008

A Semantic Grid Services Architecture in Support of Efficient Knowledge Discovery from Multilevel Clinical and Genomic Datasets.
Proceedings of the First International Conference on Health Informatics, 2008

2007
On-line Distance Learning Platform.
Proceedings of the WEBIST 2007, 2007

2006
Bio-Broker: a tool for integration of biological data sources and data analysis tools.
Softw. Pract. Exp., 2006

Integrated analysis of gene expression by association rules discovery.
BMC Bioinform., 2006

Intelligent client for integrating bioinformatics services.
Bioinform., 2006

Distributed Execution of Workflows.
Proceedings of the Computational Science, 2006

Distributed Execution of Workflows in the INB.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005
Analysis and Description of the Semantic Content of Cell Biological Videos.
Multim. Tools Appl., 2005

Mining association rules from biological databases.
J. Assoc. Inf. Sci. Technol., 2005

Real-Time Simulation for Laser-Tissue Interaction Model.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Services Integration and Task-scheduling in Bioinformatics Grids.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Bio-Broker: a biological data and services mediator system.
Proceedings of the AC 2005, 2005

Adaptive Task Scheduling in Computational GRID Environments.
Proceedings of the Advances in Grid Computing, 2005

2004
Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors.
IEEE Trans. Multim., 2004

AnaGram: protein function assignment.
Bioinform., 2004

2003
Engene: the processing and exploratory analysis of gene expression data.
Bioinform., 2003

PreP: gene expression data pre-processing.
Bioinform., 2003

Weighting and Feature Selection on Gene-Expression Data by the Use of Genetic Algorithms.
Proceedings of the Artificial Neural Nets Problem Solving Methods, 2003

2002
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE).
Softw. Pract. Exp., 2002

2001
On the Parallelisation of Bioinformatics Applications.
Briefings Bioinform., 2001

Improving Biological Sequence Property Distances by Using a Genetic Algorithm.
Proceedings of the Bio-inspired Applications of Connectionism, 2001

2000
Automatic Feature extraction in Wound Healing Videos.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2000

Automatic Tracking of Moving Bacterial Cells in Scientific Videos.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2000

Object Tracking and Event Recognition in Biological Microscopy Videos.
Proceedings of the 15th International Conference on Pattern Recognition, 2000

1998
Parallel Implementation of DNAml Program on Message-Passing Architectures.
Parallel Comput., 1998

New phylogenetic venues opened by a novel implementation of the DNAml algorithm.
Bioinform., 1998

Computational space reduction and parallelization of a new clustering approach for large groups of sequences.
Bioinform., 1998

Biological sequence analysis on distributed-shared memory multiprocessors.
Proceedings of the Sixth Euromicro Workshop on Parallel and Distributed Processing, 1998

1995
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data.
Comput. Appl. Biosci., 1995

1994
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures.
Comput. Appl. Biosci., 1994

Genetic Algorithms on LAN-message Passing Architectures using PVM: Application to the Routing Problem.
Proceedings of the Parallel Problem Solving from Nature, 1994

Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures.
Proceedings of the High-Performance Computing and Networking, 1994


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