Geir Kjetil Sandve
Orcid: 0000-0002-4959-1409
According to our database1,
Geir Kjetil Sandve
authored at least 39 papers
between 2005 and 2023.
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Bibliography
2023
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data.
Bioinform., October, 2023
Linguistically inspired roadmap for building biologically reliable protein language models.
Nat. Mac. Intell., May, 2023
2022
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking.
Bioinform., October, 2022
Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction.
Nat. Comput. Sci., 2022
Advancing protein language models with linguistics: a roadmap for improved interpretability.
CoRR, 2022
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation.
CoRR, 2022
Improving generalization of machine learning-identified biomarkers with causal modeling: an investigation into immune receptor diagnostics.
CoRR, 2022
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.
Bioinform., 2022
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.
Briefings Bioinform., 2022
2021
PLoS Comput. Biol., 2021
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.
Nat. Mach. Intell., 2021
2020
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads.
BMC Bioinform., 2020
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.
Bioinform., 2020
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis.
Briefings Bioinform., 2020
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020
2019
PLoS Comput. Biol., 2019
Colocalization analyses of genomic elements: approaches, recommendations and challenges.
Bioinform., 2019
2018
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.
Nucleic Acids Res., 2018
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis.
BMC Bioinform., 2018
2017
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.
BMC Bioinform., 2017
BMC Bioinform., 2017
2016
Bioinform., 2016
Briefings Bioinform., 2016
2014
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE.
CoRR, 2014
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.
Bioinform., 2014
2013
Nucleic Acids Res., 2013
2011
BMC Bioinform., 2011
2008
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes.
Proceedings of the Research in Computational Molecular Biology, 2008
2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006
2005
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2005