Salvatore Alaimo

According to our database, Salvatore Alaimo authored at least 15 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data.

Elisabetta C. Sciacca, Salvatore Alaimo, Gianmarco Silluzio, Alfredo Ferro, Vito Latora, Costantino Pitzalis, Alfredo Pulvirenti, Myles J. Lewis

Bioinform., April, 2023

MASFENON: Multi-Agent Adaptive Simulation Framework for Evolution in Networks of Networks.

Giorgio Locicero, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Virus finding tools: current solutions and limitations.

Grete Francesca Privitera, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti

Briefings Bioinform., 2022

NETME: on-the-fly knowledge network construction from biomedical literature.

Alessandro Muscolino, Antonio Di Maria, Rosaria Valentina Rapicavoli, Salvatore Alaimo, Lorenzo Bellomo, Fabrizio Billeci, Stefano Borzì, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti

Appl. Netw. Sci., 2022

COMBO: A Computational Framework to Analyze RNA-seq and Methylation Data Through Heterogeneous Multi-layer Networks.

Ilaria Cosentini, Vincenza Barresi, Daniele Filippo Condorelli, Alfredo Ferro, Alfredo Pulvirenti, Salvatore Alaimo

Proceedings of the Complex Networks and Their Applications XI, 2022

2021

PHENSIM: Phenotype Simulator.

Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca, Alessandro La Ferlita, Oksana B. Serebrennikova, Philip N. Tsichlis, Bud Mishra, Alfredo Pulvirenti, Alfredo Ferro

PLoS Comput. Biol., 2021

RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis.

Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti

BMC Bioinform., 2021

2020

A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data.

Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti, Roberta Bosotti

Briefings Bioinform., 2020

NETME: On-the-Fly Knowledge Network Construction from Biomedical Literature.

Alessandro Muscolino, Antonio Di Maria, Salvatore Alaimo, Stefano Borzì, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti

Proceedings of the Complex Networks & Their Applications IX, 2020

2019

TACITuS: transcriptomic data collector, integrator, and selector on big data platform.

Salvatore Alaimo, Antonio Di Maria, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti

BMC Bioinform., 2019

Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer.

Alessandro La Ferlita, Salvatore Alaimo, Dario Veneziano, Giovanni Nigita, Veronica Balatti, Carlo Maria Croce, Alfredo Ferro, Alfredo Pulvirenti

Database J. Biol. Databases Curation, 2019

2017

A novel computational method for inferring competing endogenous interactions.

Davide S. Sardina, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno

Briefings Bioinform., 2017

2015

Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification.

Salvatore Alaimo, Rosalba Giugno, Mario Acunzo, Dario Veneziano, Alfredo Ferro, Alfredo Pulvirenti

CoRR, 2015

DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.

Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti

BMC Syst. Biol., 2015

2013

Drug-target interaction prediction through domain-tuned network-based inference.

Salvatore Alaimo, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro

Bioinform., 2013