Vincenzo Bonnici

According to our database, Vincenzo Bonnici authored at least 33 papers between 2010 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies.

Vincenzo Bonnici, Claudia Mengoni, Manuel Mangoni, Giuditta Franco, Rosalba Giugno

J. Biomed. Informatics, December, 2023

An Investigation to Test Spectral Segments as Bacterial Biomarkers.

Silvia Astorino, Vincenzo Bonnici, Giuditta Franco

Proceedings of the Unconventional Computation and Natural Computation, 2023

A Machine Learning Approach for Source Code Similarity via Graph-Focused Features.

Giacomo Boldini, Alessio Diana, Vincenzo Arceri, Vincenzo Bonnici, Roberto Bagnara

Proceedings of the Machine Learning, Optimization, and Data Science, 2023

BIOCHAIN: towards a platform for securely sharing microbiological data.

Vincenzo Bonnici, Vincenzo Arceri, Alessio Diana, Flavio Bertini, Eleonora Iotti, Alessia Levante, Valentina Bernini, Erasmo Neviani, Alessandro Dal Palù

Proceedings of the International Database Engineered Applications Symposium Conference, 2023

MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems.

Simone Avesani, Vincenzo Bonnici, Simone Pernice, Marco Beccuti, Rosalba Giugno

Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

Infogenomics - The Informational Analysis of Genomes

Vincenzo Manca, Vincenzo Bonnici

48, Springer, ISBN: 978-3-031-44500-2, 2023

2021

Spectral concepts in genome informational analysis.

Vincenzo Bonnici, Giuditta Franco, Vincenzo Manca

Theor. Comput. Sci., 2021

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.

Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello

PLoS Comput. Biol., 2021

GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases.

Nicola Licheri, Vincenzo Bonnici, Marco Beccuti, Rosalba Giugno

BMC Bioinform., 2021

Challenges in gene-oriented approaches for pangenome content discovery.

Vincenzo Bonnici, Emiliano Maresi, Rosalba Giugno

Briefings Bioinform., 2021

TEDAR: Temporal dynamic signal detection of adverse reactions.

Antonino Aparo, Pietro Sala, Vincenzo Bonnici, Rosalba Giugno

Artif. Intell. Medicine, 2021

A k-mer Based Sequence Similarity for Pangenomic Analyses.

Vincenzo Bonnici, Andrea Cracco, Giuditta Franco

Proceedings of the Machine Learning, Optimization, and Data Science, 2021

An Entropy Heuristic to Optimize Decision Diagrams for Index-driven Search in Biological Graph Databases.

Nicola Licheri, Elvio Amparone, Vincenzo Bonnici, Rosalba Giugno, Marco Beccuti

Proceedings of the CIKM 2021 Workshops co-located with 30th ACM International Conference on Information and Knowledge Management (CIKM 2021), 2021

MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems.

Marco Beccuti, Vincenzo Bonnici, Rosalba Giugno

Proceedings of the CIKM '21: The 30th ACM International Conference on Information and Knowledge Management, Virtual Event, Queensland, Australia, November 1, 2021

2020

A word recurrence based algorithm to extract genomic dictionaries.

Vincenzo Bonnici, Giuditta Franco, Vincenzo Manca

CoRR, 2020

A maximum value for the Kullback-Leibler divergence between quantum discrete distributions.

Vincenzo Bonnici

CoRR, 2020

MultiRI: Fast Subgraph Matching in Labeled Multigraphs.

Giovanni Micale, Vincenzo Bonnici, Alfredo Ferro, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti

CoRR, 2020

2019

Parallel Searching on Biological Networks.

Nicola Bombieri, Vincenzo Bonnici, Rosalba Giugno

Proceedings of the 27th Euromicro International Conference on Parallel, 2019

LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis.

Vincenzo Bonnici, Simone Caligola, Giulia Fiorini, Luca Giudice, Rosalba Giugno

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

2018

miRandola 2017: a curated knowledge base of non-invasive biomarkers.

Francesco Russo, Sebastiano Di Bella, Federica Vannini, Gabriele Berti, Flavia Scoyni, Helen Cook, Alberto Santos, Giovanni Nigita, Vincenzo Bonnici, Alessandro Laganà, Filippo Geraci, Alfredo Pulvirenti, Rosalba Giugno, Federico De Masi, Kirstine Belling, Lars Juhl Jensen, Søren Brunak, Marco Pellegrini, Alfredo Ferro

Nucleic Acids Res., 2018

An Informational Test for Random Finite Strings.

Vincenzo Bonnici, Vincenzo Manca

Entropy, 2018

Arena-Idb: a platform to build human non-coding RNA interaction networks.

Vincenzo Bonnici, Giorgio De Caro, Giorgio Constantino, Sabino Liuni, Domenica D'Elia, Nicola Bombieri, Flavio Licciulli, Rosalba Giugno

BMC Bioinform., 2018

Correction to: cuRnet: an R package for graph traversing on GPU.

Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno

BMC Bioinform., 2018

cuRnet: an R package for graph traversing on GPU.

Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno

BMC Bioinform., 2018

Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks.

Antonino Aparo, Vincenzo Bonnici, Giovanni Micale, Alfredo Ferro, Dennis E. Shasha, Alfredo Pulvirenti, Rosalba Giugno

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

Centrality Speeds the Subgraph Isomorphism Search Up in Target Aware Contexts.

Vincenzo Bonnici, Simone Caligola, Antonino Aparo, Rosalba Giugno

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

An Efficient Implementation of a Subgraph Isomorphism Algorithm for GPUs.

Vincenzo Bonnici, Rosalba Giugno, Nicola Bombieri

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

On the Variable Ordering in Subgraph Isomorphism Algorithms.

Vincenzo Bonnici, Rosalba Giugno

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2016

APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks.

Vincenzo Bonnici, Federico Busato, Giovanni Micale, Nicola Bombieri, Alfredo Pulvirenti, Rosalba Giugno

Bioinform., 2016

2015

NetMatchStar: an enhanced Cytoscape network querying app.

Fabio Rinnone, Giovanni Micale, Vincenzo Bonnici, Gary D. Bader, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno

F1000Research, 2015

DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.

Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti

BMC Syst. Biol., 2015

2013

A subgraph isomorphism algorithm and its application to biochemical data.

Vincenzo Bonnici, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro

BMC Bioinform., 2013

2010

Enhancing Graph Database Indexing by Suffix Tree Structure.

Vincenzo Bonnici, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti, Dennis E. Shasha

Proceedings of the Pattern Recognition in Bioinformatics, 2010