Sergei Maslov

According to our database, Sergei Maslov authored at least 24 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi.

Ananthan Nambiar, Veronika Dubinkina, Simon Liu, Sergei Maslov

PLoS Comput. Biol., November, 2023

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations.

Tong Wang, Xu-Wen Wang, Kathleen A. Lee-Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun, Sergei Maslov, Yang-Yu Liu

Nat. Mac. Intell., March, 2023

Transformer Neural Networks for Protein Family and Interaction Prediction Tasks.

Ananthan Nambiar, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz

J. Comput. Biol., 2023

Semi-Quantitative Group Testing for Efficient and Accurate qPCR Screening of Pathogens with a Wide Range of Loads.

Anantham Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic

CoRR, 2023

2022

Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments.

Yulia Fridman, Zihan Wang, Sergei Maslov, Akshit Goyal

PLoS Comput. Biol., December, 2022

A cross-study analysis of drug response prediction in cancer cell lines.

Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, Thomas S. Brettin, Cristina Garcia-Cardona, Austin Clyde, Judith D. Cohn, James H. Doroshow, Xiaotian Duan, Veronika Dubinkina, Yvonne A. Evrard, Ya Ju Fan, Jason Gans, Stewart He, Pinyi Lu, Sergei Maslov, Alexander Partin, Maulik Shukla, Eric A. Stahlberg, Justin M. Wozniak, Hyun Seung Yoo, George F. Zaki, Yitan Zhu, Rick Stevens

Briefings Bioinform., 2022

2020

Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence.

Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier

PLoS Comput. Biol., 2020

Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks.

Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019

Evidence for a multi-level trophic organization of the human gut microbiome.

Tong Wang, Akshit Goyal, Veronika Dubinkina, Sergei Maslov

PLoS Comput. Biol., 2019

Multistability and regime shifts in microbial communities explained by competition for essential nutrients.

Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey, Sergei Maslov

CoRR, 2019

2018

Predicting tumor cell line response to drug pairs with deep learning.

Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens

BMC Bioinform., 2018

2017

Microbial community structure predicted by the stable marriage problem.

Akshit Goyal, Veronika Dubinkina, Sergei Maslov

CoRR, 2017

2016

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks.

Daifeng Wang, Fei He, Sergei Maslov, Mark Gerstein

PLoS Comput. Biol., 2016

2015

Diversity Waves in Collapse-Driven Population Dynamics.

Sergei Maslov, Kim Sneppen

PLoS Comput. Biol., 2015

2013

Universal distribution of component frequencies in biological and technological systems.

Tin Yau Pang, Sergei Maslov

Proc. Natl. Acad. Sci. USA, 2013

Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks.

Purushottam D. Dixit, Sergei Maslov

PLoS Comput. Biol., 2013

Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar.

Daifeng Wang, Eric Pan, Gang Fang, Sunita Kumari, Fei He, Doreen Ware, Sergei Maslov, Mark Gerstein

Proceedings of the ACM Conference on Bioinformatics, 2013

2011

A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology.

Tin Yau Pang, Sergei Maslov

PLoS Comput. Biol., 2011

2008

Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks.

Iaroslav Ispolatov, Sergei Maslov

BMC Bioinform., 2008

Topological and Dynamical Properties of Protein Interaction Networks.

Sergei Maslov

Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2007

UV-Induced Mutagenesis in <i>Escherichia coli</i> SOS Response: A Quantitative Model.

Sandeep Krishna, Sergei Maslov, Kim Sneppen

PLoS Comput. Biol., 2007

Finding scientific gems with Google's PageRank algorithm.

P. Chen, H. Xie, Sergei Maslov, Sidney Redner

J. Informetrics, 2007

2006

Ranking Scientific Publications Using a Simple Model of Network Traffic

Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov

CoRR, 2006

Automatic pathway building in biological association networks.

Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova, Sergei Maslov, Sergei Egorov, Alexander Nikitin, Nikolai Daraselia, Ilya Mazo

BMC Bioinform., 2006