Rick L. Stevens

Orcid: 0000-0002-4268-4020

Affiliations:
  • Argonne National Laboratory, Lemont, Illinois, USA


According to our database1, Rick L. Stevens authored at least 132 papers between 1987 and 2024.

Collaborative distances:

Awards

ACM Fellow

ACM Fellow 2020, "For contributions in high-performance computing systems, collaborative environments, and tools for large-scale science initiatives".

Timeline

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Bibliography

2024
Entropy-Reinforced Planning with Large Language Models for Drug Discovery.
CoRR, 2024

2023
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.
Int. J. High Perform. Comput. Appl., November, 2023

ChemoGraph: Interactive Visual Exploration of the Chemical Space.
Comput. Graph. Forum, June, 2023

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Nucleic Acids Res., January, 2023

DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies.
CoRR, 2023

Blending Imitation and Reinforcement Learning for Robust Policy Improvement.
CoRR, 2023

Towards a Modular Architecture for Science Factories.
CoRR, 2023

Deep Fair Partition for Hyperspectral Image Classification.
Proceedings of the 13th Workshop on Hyperspectral Imaging and Signal Processing: Evolution in Remote Sensing, 2023

Scalable Lead Prediction with Transformers using HPC resources.
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023

Entropy-Based Regularization on Deep Learning Models for Anti-Cancer Drug Response Prediction.
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023

Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery.
Proceedings of the Platform for Advanced Scientific Computing Conference, 2023

WordScape: a Pipeline to extract multilingual, visually rich Documents with Layout Annotations from Web Crawl Data.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Transferable Graph Neural Fingerprint Models for Quick Response to Future Bio-Threats.
Proceedings of the International Conference on Machine Learning and Applications, 2023

An Automation Framework for Comparison of Cancer Response Models Across Configurations.
Proceedings of the 19th IEEE International Conference on e-Science, 2023

Trillion Parameter AI Serving Infrastructure for Scientific Discovery: A Survey and Vision.
Proceedings of the IEEE/ACM 10th International Conference on Big Data Computing, 2023

2022
High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor.
J. Chem. Inf. Model., 2022

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action.
Int. J. High Perform. Comput. Appl., 2022

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation.
Frontiers Bioinform., 2022

Deep learning methods for drug response prediction in cancer: predominant and emerging trends.
CoRR, 2022

Cost-Effective Online Contextual Model Selection.
CoRR, 2022

A cross-study analysis of drug response prediction in cancer cell lines.
Briefings Bioinform., 2022

Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery.
Proceedings of the Tenth International Conference on Learning Representations, 2022

2021
Accelerating Scientific Applications With SambaNova Reconfigurable Dataflow Architecture.
Comput. Sci. Eng., 2021

Learning from learning machines: a new generation of AI technology to meet the needs of science.
CoRR, 2021

Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening.
CoRR, 2021

Scaffold Embeddings: Learning the Structure Spanned by Chemical Fragments, Scaffolds and Compounds.
CoRR, 2021

Pandemic Drugs at Pandemic Speed: Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers.
CoRR, 2021

Learning curves for drug response prediction in cancer cell lines.
BMC Bioinform., 2021

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.
Briefings Bioinform., 2021

AgEBO-tabular: joint neural architecture and hyperparameter search with autotuned data-parallel training for tabular data.
Proceedings of the International Conference for High Performance Computing, 2021

Scalable HPC & AI infrastructure for COVID-19 therapeutics.
Proceedings of the PASC '21: Platform for Advanced Scientific Computing Conference, 2021


Neko: a Library for Exploring Neuromorphic Learning Rules.
Proceedings of the ICONS 2021: International Conference on Neuromorphic Systems 2021, 2021

2020
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
Nucleic Acids Res., 2020

Scalable HPC and AI Infrastructure for COVID-19 Therapeutics.
CoRR, 2020

Targeting SARS-CoV-2 with AI- and HPC-enabled Lead Generation: A First Data Release.
CoRR, 2020

Regression Enrichment Surfaces: a Simple Analysis Technique for Virtual Drug Screening Models.
CoRR, 2020

Ensemble Transfer Learning for the Prediction of Anti-Cancer Drug Response.
CoRR, 2020

Deep Medical Image Analysis with Representation Learning and Neuromorphic Computing.
CoRR, 2020

A Systematic Approach to Featurization for Cancer Drug Sensitivity Predictions with Deep Learning.
CoRR, 2020

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response.
Proceedings of the 6th IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2020

Overview of HPC and AI Computing for COVID-19 in the US.
Proceedings of the PACT '20: International Conference on Parallel Architectures and Compilation Techniques, 2020

2019
PATRIC as a unique resource for studying antimicrobial resistance.
Briefings Bioinform., 2019

Scalable reinforcement-learning-based neural architecture search for cancer deep learning research.
Proceedings of the International Conference for High Performance Computing, 2019

Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks.
Proceedings of the 48th International Conference on Parallel Processing, 2019

2018
Big data and extreme-scale computing.
Int. J. High Perform. Comput. Appl., 2018

Precision Medicine as an Accelerator for Next Generation Cognitive Supercomputing.
CoRR, 2018

Predicting tumor cell line response to drug pairs with deep learning.
BMC Bioinform., 2018

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.
BMC Bioinform., 2018

Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies.
Proceedings of the 4th International Workshop on Extreme Scale Programming Models and Middleware, 2018

2017
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
Nucleic Acids Res., 2017

Deep Learning in Cancer and Infectious Disease: Novel Driver Problems for Future HPC Architecture.
Proceedings of the 26th International Symposium on High-Performance Parallel and Distributed Computing, 2017

2014
PATRIC, the bacterial bioinformatics database and analysis resource.
Nucleic Acids Res., 2014

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
Nucleic Acids Res., 2014

2013
Large-Scale Modeling of Epileptic Seizures: Scaling Properties of Two Parallel Neuronal Network Simulation Algorithms.
Comput. Math. Methods Medicine, 2013

2012
Real Time Metagenomics: Using <i>k</i>-mers to annotate metagenomes.
Bioinform., 2012

2011
The International Exascale Software Project roadmap.
Int. J. High Perform. Comput. Appl., 2011

HPCS 2011 keynotes: Tuesday keynote I: High-performance computing and biology: The quest for a predictive biological theory.
Proceedings of the 2011 International Conference on High Performance Computing & Simulation, 2011

2010
Oscillation in a network model of neocortex.
Neurocomputing, 2010

Accessing the SEED genome databases via Web services API: tools for programmers.
BMC Bioinform., 2010

Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models.
Proceedings of the Advances in Bioinformatics, 2010

2009
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.
PLoS Comput. Biol., 2009

The International Exascale Software Project: a Call To Cooperative Action By the Global High-Performance Community.
Int. J. High Perform. Comput. Appl., 2009

Inferring a Species Tree from Gene Trees in the Presence of HGT.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

A Bayesian Approach to High-Throughput Biological Model Generation.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
BMC Bioinform., 2008

Multi-Parallel Open Technology to Enable Collaborative Volume Visualization: How to Create Global Immersive Virtual Anatomy Classrooms.
Proceedings of the Medicine Meets Virtual Reality 16, 2008

SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models.
Proceedings of the 6th International Workshop on Challenges of Large Applications in Distributed Environments, 2008

2007
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
Nucleic Acids Res., 2007

Immersive Virtual Anatomy Course using a Cluster of Volume Visualization Machines and Passive Stereo.
Proceedings of the Medicine Meets Virtual Reality 15, 2007

ParalleX: A Study of A New Parallel Computation Model.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006
CupHolder: A Multi-Person Interactive High-Resolution Workstation.
Proceedings of the IEEE Virtual Reality Conference, 2006

Hierarchical multithreading: programming model and system software.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Extending Multicast Communications by Hybrid Overlay Network.
Proceedings of IEEE International Conference on Communications, 2006

TeraGrid: Analysis of Organization, System Architecture, and Middleware Enabling New Types of Applications.
Proceedings of the High Performance Computing and Grids in Action, 2006

Approaches to Architecture-Aware Parallel Scientific Computation.
Proceedings of the Parallel Processing for Scientific Computing, 2006

2005
Perceptual photometric seamlessness in projection-based tiled displays.
ACM Trans. Graph., 2005

Real Time Change Detection and Alerts from Highway Traffic Data.
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005

Performance Metrics of IP Multicast Sessions.
Proceedings of the Seventh IEEE International Symposium on Multimedia (ISM 2005), 2005

Developing a Distributed Collaborative Radiological Visualization Application.
Proceedings of the From Grid to Healthgrid, 2005

Pixel-Aligned Warping for Multiprojector Tiled Displays.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2005

An Infrastructure of Network Services for Seamless Integration in Advanced Collaborative Computing Environments.
Proceedings of the 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26, 2005

Challenges in large scale distributed computing: bioinformatics.
Proceedings of the 2005 Challenges of Large Applications in Distributed Environments, 2005

2004
Color Nonuniformity in Projection-Based Displays: Analysis and Solutions.
IEEE Trans. Vis. Comput. Graph., 2004

Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science.
New Gener. Comput., 2004

Simulation of neocortical epileptiform activity using parallel computing.
Neurocomputing, 2004

The SEED: a peer-to-peer environment for genome annotation.
Commun. ACM, 2004

Isocoupling: Reusing Kernel Coupling Values to Predict the Performance of Parallel Applications.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

Capability matching of data streams with network services.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004

Group-Oriented Collaboration.
Proceedings of the Grid 2 - Blueprint for a New Computing Infrastructure, Second Edition, 2004

2003
Prophesy: an infrastructure for performance analysis and modeling of parallel and grid applications.
SIGMETRICS Perform. Evaluation Rev., 2003

Prototyping the Workspaces of the Future.
IEEE Internet Comput., 2003

Introduction: Performance Analysis and Modeling.
Clust. Comput., 2003

Using Kernel Coupling to Improve the Performance of Multithreaded Applications.
Proceedings of the ISCA 16th International Conference on Parallel and Distributed Computing Systems, 2003

2002
LAM: luminance attenuation map for photometric uniformity in projection based displays.
Proceedings of the ACM Symposium on Virtual Reality Software and Technology, 2002

Next Generation System Software for Future High-End Computing Systems.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

Using Kernel Couplings to Predict Parallel Application Performance.
Proceedings of the 11th IEEE International Symposium on High Performance Distributed Computing (HPDC-11 2002), 2002

2001
Design and Development of the Prophesy Performance Database for Distributed Scientific Applications.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001

Prophesy: Automating the Modeling Process.
Proceedings of the 3rd Annual International Workshop on Active Middleware Services (AMS 2001), 2001

2000
Flash code: studying astrophysical thermonuclear flashes.
Comput. Sci. Eng., 2000

Data management for large-scale scientific computations in high performance distributed systems.
Clust. Comput., 2000

Tutorial: Introduction to Building Projection-based Tiled Display Systems.
IEEE Computer Graphics and Applications, 2000

The Ten Hottest Topics in Parallel and Distributed Computing for the Next Millennium.
Proceedings of the 14th International Parallel & Distributed Processing Symposium (IPDPS'00), 2000

Prophesy: An Infrastructure for Analyzing and Modeling the Performance of Parallel and Distributed Applications.
Proceedings of the Ninth IEEE International Symposium on High Performance Distributed Computing, 2000

1999
Capstone Address: ActiveSpaces - The Access Grid, Active Mural and Advanced Visualization Systems.
Proceedings of the 10th IEEE Visualization Conference, 1999

1997
Parallel Molecular Dynamics: Implications for Massively Parallel Machines.
J. Parallel Distributed Comput., 1997

From the I-WAY to the National Technology Grid.
Commun. ACM, 1997

The Argonne Voyager Multimedia Server.
Proceedings of the 6th International Symposium on High Performance Distributed Computing, 1997

UbiWorld: an environment integrating virtual reality, supercomputing, and design.
Proceedings of the 6th Heterogeneous Computing Workshop, 1997

Performance model of the Argonne Voyager multimedia server.
Proceedings of the 1997 International Conference on Application-Specific Systems, 1997

1996
Toward high-performance computational chemistry: II. A scalable self-consistent field program.
J. Comput. Chem., 1996

Performance Modeling of Interactive, Immersive Virtual Environments for Finite Element Simulations.
Int. J. High Perform. Comput. Appl., 1996

Overview of the I-Way: Wide-Area Visual Supercomputing.
Int. J. High Perform. Comput. Appl., 1996

Identifying and reducing critical lag in finite element simulations.
IEEE Computer Graphics and Applications, 1996

Virtual Reality Over High-Speed Networks.
IEEE Computer Graphics and Applications, 1996

UbiWorld: An Environment Integrating Virtual Reality, Supercomputing and Design.
Proceedings of the 5th International Symposium on High Performance Distributed Computing (HPDC '96), 1996

Tools for Distributed Collaborative Environments: A Research Agenda.
Proceedings of the 5th International Symposium on High Performance Distributed Computing (HPDC '96), 1996

A Decomposition Method For Efficient Use Of Distributed Supercomputers For Finite Element Applications.
Proceedings of the 1996 International Conference on Application-Specific Systems, 1996

1995
Designing the future of collaborative science: Argonne's Futures Laboratory.
IEEE Parallel Distributed Technol. Syst. Appl., 1995

Multimedia Applications and High-Performance Computing.
IEEE Parallel Distributed Technol. Syst. Appl., 1995

Distributed Information Management in the National HPCC Software Exchange.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995

1994
High-performance computing and communications.
Future Gener. Comput. Syst., 1994

Multimedia Supercomputing: The Use of Supercomputers to Drive High-Performance Multimedia Systems and Virtual Environments.
Proceedings of the Third International Symposium on High Performance Distributed Computing, 1994

1991
Parallel Scalability of the Spectral Transform Method.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991

1990
The Aurora or-parallel Prolog system.
New Gener. Comput., 1990

Parallel Programming with Algorithmic Motifs.
Proceedings of the 1990 International Conference on Parallel Processing, 1990

Automated Reasoning Contributed to Mathematics and Logic.
Proceedings of the 10th International Conference on Automated Deduction, 1990

1989
Solving Open Problems in Right Alternative Rings with Z-Module Reasoning.
J. Autom. Reason., 1989

1988
Scheduling OR-Parallelism: An Argonne Perspective.
Proceedings of the Logic Programming, 1988

The Aurora Or-Parallel Prolog System.
Proceedings of the International Conference on Fifth Generation Computer Systems, 1988

Challenge Problems from Nonassociative Rings for Theorem Provers.
Proceedings of the 9th International Conference on Automated Deduction, 1988

1987
Some Experiments in Nonassociative Ring Theory with an Automated Theorem Prover.
J. Autom. Reason., 1987


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