Justin M. Wozniak

According to our database1, Justin M. Wozniak authored at least 82 papers between 2005 and 2024.

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Bibliography

2024
Steering a Fleet: Adaptation for Large-Scale, Workflow-Based Experiments.
CoRR, 2024

2023
NSF RESUME HPC Workshop: High-Performance Computing and Large-Scale Data Management in Service of Epidemiological Modeling.
CoRR, 2023

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

An Automation Framework for Comparison of Cancer Response Models Across Configurations.
Proceedings of the 19th IEEE International Conference on e-Science, 2023

PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs.
Proceedings of the 19th IEEE International Conference on e-Science, 2023

2022
A cross-study analysis of drug response prediction in cancer cell lines.
Briefings Bioinform., 2022

WfBench: Automated Generation of Scientific Workflow Benchmarks.
Proceedings of the IEEE/ACM International Workshop on Performance Modeling, 2022

Large Scale Caching and Streaming of Training Data for Online Deep Learning.
Proceedings of the FlexScience '22: Proceedings of the 12th Workshop on AI and Scientific Computing at Scale using Flexible Computing Infrastructures, 2022

Tracking Dubious Data: Protecting Scientific Workflows from Invalidated Experiments.
Proceedings of the 18th IEEE International Conference on e-Science, 2022

2021
A population data-driven workflow for COVID-19 modeling and learning.
Int. J. High Perform. Comput. Appl., 2021

Online data analysis and reduction: An important Co-design motif for extreme-scale computers.
Int. J. High Perform. Comput. Appl., 2021

ExaWorks: Workflows for Exascale.
CoRR, 2021

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development.
CoRR, 2021

Workflows Community Summit: Bringing the Scientific Workflows Community Together.
CoRR, 2021

ExaWorks: Workflows for Exascale.
Proceedings of the 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 2021

Braid-DB: Toward AI-Driven Science with Machine Learning Provenance.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Integration of Experiment, Big Data, and Modeling and Simulation, 2021

Bootstrapping in-situ workflow auto-tuning via combining performance models of component applications.
Proceedings of the International Conference for High Performance Computing, 2021

In-situ workflow auto-tuning through combining component models.
Proceedings of the PPoPP '21: 26th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2021

2020
In-situ Workflow Auto-tuning via Combining Performance Models of Component Applications.
CoRR, 2020

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response.
Proceedings of the 6th IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2020

DeepClone: Lightweight State Replication of Deep Learning Models for Data Parallel Training.
Proceedings of the IEEE International Conference on Cluster Computing, 2020

DeepFreeze: Towards Scalable Asynchronous Checkpointing of Deep Learning Models.
Proceedings of the 20th IEEE/ACM International Symposium on Cluster, 2020

2019
MPI jobs within MPI jobs: A practical way of enabling task-level fault-tolerance in HPC workflows.
Future Gener. Comput. Syst., 2019

Understanding Scalability and Fine-Grain Parallelism of Synchronous Data Parallel Training.
Proceedings of the 2019 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2019

Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks.
Proceedings of the 48th International Conference on Parallel Processing, 2019

Parsl: Pervasive Parallel Programming in Python.
Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing, 2019

2018
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework.
IEEE Trans. Comput. Soc. Syst., 2018

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.
BMC Bioinform., 2018

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.
BMC Bioinform., 2018

Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies.
Proceedings of the 4th International Workshop on Extreme Scale Programming Models and Middleware, 2018

Toward Understanding I/O Behavior in HPC Workflows.
Proceedings of the 3rd IEEE/ACM International Workshop on Parallel Data Storage & Data Intensive Scalable Computing Systems, 2018

Methodology for the Rapid Development of Scalable HPC Data Services.
Proceedings of the 3rd IEEE/ACM International Workshop on Parallel Data Storage & Data Intensive Scalable Computing Systems, 2018

Parsl: Scalable Parallel Scripting in Python.
Proceedings of the 10th International Workshop on Science Gateways, 2018

2017
Experimental evaluation of a flexible I/O architecture for accelerating workflow engines in ultrascale environments.
Parallel Comput., 2017

Streaming supercomputing needs workflow-enabled programming-in-the-large.
CoRR, 2017

Report on the first workshop on negative and null results in eScience.
Concurr. Comput. Pract. Exp., 2017

Supporting task-level fault-tolerance in HPC workflows by launching MPI jobs inside MPI jobs.
Proceedings of the 12th Workshop on Workflows in Support of Large-Scale Science, 2017

Computing Just What You Need: Online Data Analysis and Reduction at Extreme Scales.
Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017

2016
From desktop to Large-Scale Model Exploration with Swift/T.
Proceedings of the Winter Simulation Conference, 2016

Flexible Data-Aware Scheduling for Workflows over an In-memory Object Store.
Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016

Challenges and Opportunities for Dataflow Processing on Exascale Computers.
Proceedings of the Sixth Workshop on Data-Flow Execution Models for Extreme Scale Computing, 2016

2015
Interlanguage parallel scripting for distributed-memory scientific computing.
Proceedings of the 10th Workshop on Workflows in Support of Large-Scale Science, 2015

Lessons Learned from Building In Situ Coupling Frameworks.
Proceedings of the First Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2015

Porting Ordinary Applications to Blue Gene/Q Supercomputers.
Proceedings of the 11th IEEE International Conference on e-Science, 2015

Toward Interlanguage Parallel Scripting for Distributed-Memory Scientific Computing.
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015

Big Data Remote Access Interfaces for Light Source Science.
Proceedings of the 2nd IEEE/ACM International Symposium on Big Data Computing, 2015

2014
Petascale Tcl with NAMD, VMD, and Swift/T.
Proceedings of the 1st First Workshop for High Performance Technical Computing in Dynamic Languages, 2014

Compiler Techniques for Massively Scalable Implicit Task Parallelism.
Proceedings of the International Conference for High Performance Computing, 2014

Evaluating storage systems for scientific data in the cloud.
Proceedings of the ScienceCloud'14, 2014

Design and evaluation of the gemtc framework for GPU-enabled many-task computing.
Proceedings of the 23rd International Symposium on High-Performance Parallel and Distributed Computing, 2014

Networking Materials Data: Accelerating Discovery at Experimental Facilities.
Proceedings of the Big Data and High Performance Computing, 2014

Compiler Optimization for Extreme-Scale Scripting.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

Big Data Staging with MPI-IO for Interactive X-ray Science.
Proceedings of the 1st IEEE/ACM International Symposium on Big Data Computing, 2014

2013
JETS: Language and System Support for Many-Parallel-Task Workflows.
J. Grid Comput., 2013

Turbine: A Distributed-memory Dataflow Engine for High Performance Many-task Applications.
Fundam. Informaticae, 2013

Reusability in Science: From Initial User Engagement to Dissemination of Results.
CoRR, 2013

Parallelizing the execution of sequential scripts.
Proceedings of the International Conference for High Performance Computing, 2013

Dataflow coordination of data-parallel tasks via MPI 3.0.
Proceedings of the 20th European MPI Users's Group Meeting, 2013

Swift/T: scalable data flow programming for many-task applications.
Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2013

MTC envelope: defining the capability of large scale computers in the context of parallel scripting applications.
Proceedings of the 22nd International Symposium on High-Performance Parallel and Distributed Computing, 2013

Enabling multi-task computation on Galaxy-based gateways using swift.
Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013

Swift/T: Large-Scale Application Composition via Distributed-Memory Dataflow Processing.
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013

Evaluating Cloud Computing Techniques for Smart Power Grid Design Using Parallel Scripting.
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013

2012
Many-Task Computing and Blue Waters
CoRR, 2012

Turbine: a distributed-memory dataflow engine for extreme-scale many-task applications.
Proceedings of the 1st ACM SIGMOD Workshop on Scalable Workflow Execution Engines and Technologies, 2012

Design and analysis of data management in scalable parallel scripting.
Proceedings of the SC Conference on High Performance Computing Networking, 2012

A Case for Optimistic Coordination in HPC Storage Systems.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012

AESOP: Expressing Concurrency in High-Performance System Software.
Proceedings of the Seventh IEEE International Conference on Networking, 2012

2011
Swift: A language for distributed parallel scripting.
Parallel Comput., 2011

Coasters: Uniform Resource Provisioning and Access for Clouds and Grids.
Proceedings of the IEEE 4th International Conference on Utility and Cloud Computing, 2011

JETS: Language and System Support for Many-Parallel-Task Computing.
Proceedings of the 2011 International Conference on Parallel Processing Workshops, 2011

2010
Distributed object storage rebuild analysis via simulation with GOBS.
Proceedings of the IEEE/IFIP International Conference on Dependable Systems and Networks Workshops (DSN-W 2010), Chicago, Illinois, USA, June 28, 2010

2009
Implementing Reliable Data Structures for MPI Services in High Component Count Systems.
Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface, 2009

2008
Biomolecular committor probability calculation enabled by processing in network storage.
Parallel Comput., 2008

Making the best of a bad situation: Prioritized storage management in GEMS.
Future Gener. Comput. Syst., 2008

2007
Biomolecular Path Sampling Enabled by Processing in Network Storage.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Overdrive Controllers for Distributed Scientific Computation.
Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007

Effects of Low-Quality Computation Time Estimates in Policed Schedulers.
Proceedings of the Proceedings 40th Annual Simulation Symposium (ANSS-40 2007), 2007

2006
Access control for a replica management database.
Proceedings of the 2006 ACM Workshop On Storage Security And Survivability, 2006

2005
Separating Abstractions from Resources in a Tactical Storage System.
Proceedings of the ACM/IEEE SC2005 Conference on High Performance Networking and Computing, 2005

Generosity and gluttony in GEMS: grid enabled molecular simulations.
Proceedings of the 14th IEEE International Symposium on High Performance Distributed Computing, 2005

GIPSE: Streamlining the Management of Simulation on the Grid.
Proceedings of the Proceedings 38th Annual Simulation Symposium (ANSS-38 2005), 2005


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