Sergey Ovchinnikov

According to our database, Sergey Ovchinnikov authored at least 6 papers between 2017 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters.

Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos

Frontiers Bioinform., May, 2023

End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman.

Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter Koo, Sergey Ovchinnikov

Bioinform., January, 2023

2021

Synthesis, Mass Spectroscopy Detection, and Density Functional Theory Investigations of the Gd Endohedral Complexes of C82 Fullerenols.

Anastasia A. Shakirova, Felix N. Tomilin, Vladimir A. Pomogaev, Natalia G. Vnukova, Grigory N. Churilov, Nadezhda S. Kudryasheva, Olga N. Tchaikovskaya, Sergey Ovchinnikov, Pavel V. Avramov

Comput., 2021

Transformer protein language models are unsupervised structure learners.

Roshan Rao, Joshua Meier, Tom Sercu, Sergey Ovchinnikov, Alexander Rives

Proceedings of the 9th International Conference on Learning Representations, 2021

2018

De novo design of a fluorescence-activating β-barrel.

Jiayi Dou, Anastassia A. Vorobieva, William Sheffler, Lindsey Doyle, Hahnbeom Park, Matthew J. Bick, Binchen Mao, Glenna W. Foight, Min-Yen Lee, Lauren A. Gagnon, Lauren P. Carter, Banumathi Sankaran, Sergey Ovchinnikov, Enrique Marcos, Po-Ssu Huang, Joshua C. Vaughan, Barry L. Stoddard, David Baker

Nat., 2018

2017

Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.

Stefan Schoebel, Wei Mi, Alexander Stein, Sergey Ovchinnikov, Ryan E. Pavlovicz, Frank DiMaio, David Baker, Melissa G. Chambers, Huayou Su, Dongsheng Li, Tom A. Rapoport, Maofu Liao

Nat., 2017