Milot Mirdita

According to our database, Milot Mirdita authored at least 11 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Simple and Thorough Detection of Related Sequences with Position-Varying Probabilities of Substitutions, Insertions, and Deletions.

Martin C. Frith, Patrick Boppert, Patrick Styll, Milot Mirdita

J. Comput. Biol., 2026

2025

Easy and interactive taxonomic profiling with Metabuli App.

Sunjae Lee, Jaebeom Kim, Milot Mirdita, Cameron L. M. Gilchrist, Martin Steinegger

Bioinform., 2025

The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling.

Andre Cornman, Jacob West-Roberts, Antonio Pedro Camargo, Simon Roux, Martin Beracochea, Milot Mirdita, Sergey Ovchinnikov, Yunha Hwang

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

2023

Foldcomp: a library and format for compressing and indexing large protein structure sets.

Hyunbin Kim, Milot Mirdita, Martin Steinegger

Bioinform., April, 2023

2021

DescribePROT: database of amino acid-level protein structure and function predictions.

Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan

Nucleic Acids Res., 2021

PredictProtein - Predicting Protein Structure and Function for 29 Years.

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost

Nucleic Acids Res., 2021

SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts.

Ruoshi Zhang, Milot Mirdita, Eli Levy Karin, Clovis Norroy, Clovis Galiez, Johannes Söding

Bioinform., 2021

Fast and sensitive taxonomic assignment to metagenomic contigs.

Milot Mirdita, Martin Steinegger, Florian P. Breitwieser, Johannes Söding, Eli Levy Karin

Bioinform., 2021

2019

HH-suite3 for fast remote homology detection and deep protein annotation.

Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding

BMC Bioinform., 2019

MMseqs2 desktop and local web server app for fast, interactive sequence searches.

Milot Mirdita, Martin Steinegger, Johannes Söding

Bioinform., 2019

2017

Uniclust databases of clustered and deeply annotated protein sequences and alignments.

Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger

Nucleic Acids Res., 2017