Georgios A. Pavlopoulos

According to our database, Georgios A. Pavlopoulos authored at least 36 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources.

Evangelos Karatzas, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos

Bioinform., August, 2023

Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters.

Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos

Frontiers Bioinform., May, 2023

2022

NORMA: The Network Makeup Artist - A Web Tool for Network Annotation Visualization.

Mikaela Koutrouli, Evangelos Karatzas, Katerina Papanikolopoulou, Georgios A. Pavlopoulos

Genom. Proteom. Bioinform., 2022

Extreme-Scale Many-against-Many Protein Similarity Search.

Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç

Proceedings of the SC22: International Conference for High Performance Computing, 2022

2021

The human GPCR signal transduction network.

Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos

Netw. Model. Anal. Health Informatics Bioinform., 2021

ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics.

Evangelos Theodorakis, Andreas N. Antonakis, Ismini Baltsavia, Georgios A. Pavlopoulos, Martina Samiotaki, Grigoris D. Amoutzias, Theodosios Theodosiou, Oreste Acuto, Georgios Efstathiou, Ioannis Iliopoulos

Nucleic Acids Res., 2021

Arena3Dweb: interactive 3D visualization of multilayered networks.

Evangelos Karatzas, Fotis A. Baltoumas, Nikolaos A. Panayiotou, Reinhard Schneider, Georgios A. Pavlopoulos

Nucleic Acids Res., 2021

VICTOR: A visual analytics web application for comparing cluster sets.

Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos

Comput. Biol. Medicine, 2021

2020

Distributed many-to-many protein sequence alignment using sparse matrices.

Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç

Proceedings of the International Conference for High Performance Computing, 2020

2017

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

ProteoSign: an end-user online differential proteomics statistical analysis platform.

Georgios Efstathiou, Andreas N. Antonakis, Georgios A. Pavlopoulos, Theodosios Theodosiou, Peter Divanach, David C. Trudgian, Benjamin Thomas, Nikolas Papanikolaou, Michalis Aivaliotis, Oreste Acuto, Ioannis Iliopoulos

Nucleic Acids Res., 2017

Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis.

Georgios A. Pavlopoulos, David Páez-Espino, Nikos Kyrpides, Ioannis Iliopoulos

Adv. Bioinformatics, 2017

2016

DrugQuest - a text mining workflow for drug association discovery.

Nikolas Papanikolaou, Georgios A. Pavlopoulos, Theodosios Theodosiou, Ioannis S. Vizirianakis, Ioannis Iliopoulos

BMC Bioinform., 2016

2015

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery.

Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos

Bioinform., 2015

2014

BioTextQuest⁺: a knowledge integration platform for literature mining and concept discovery.

Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos

Bioinform., 2014

2013

Unraveling genomic variation from next generation sequencing data.

Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos

BioData Min., 2013

OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction.

Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos

Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012

Arena3D: visualizing time-driven phenotypic differences in biological systems.

Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider

BMC Bioinform., 2012

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs.

Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau

BMC Bioinform., 2012

ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings.

Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau

Bioinform., 2012

Caipirini: using gene sets to rank literature.

Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider

BioData Min., 2012

Mining Cell Cycle Literature Using Support Vector Machines.

Theodoros G. Soldatos, Georgios A. Pavlopoulos

Proceedings of the Artificial Intelligence: Theories and Applications, 2012

Towards Better Prioritization of Epigenetically Modified DNA Regions.

Ernesto Iacucci, Dusan Popovic, Georgios A. Pavlopoulos, Léon-Charles Tranchevent, Marijke Bauters, Bart De Moor, Yves Moreau

Proceedings of the Artificial Intelligence: Theories and Applications, 2012

A Simple Genetic Algorithm for Biomarker Mining.

Dusan Popovic, Alejandro Sifrim, Georgios A. Pavlopoulos, Yves Moreau, Bart De Moor

Proceedings of the Pattern Recognition in Bioinformatics, 2012

Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization.

Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle

Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011

Using graph theory to analyze biological networks.

Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos

BioData Min., 2011

2010

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships.

Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega

BMC Bioinform., 2010

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.

Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas

Database J. Biol. Databases Curation, 2010

A reference guide for tree analysis and visualization.

Georgios A. Pavlopoulos, Theodoros G. Soldatos, Adriano Barbosa-Silva, Reinhard Schneider

BioData Min., 2010

2009

Data integration and visualization techniques in systems biology.

Georgios A. Pavlopoulos

PhD thesis, 2009

GIBA: a clustering tool for detecting protein complexes.

Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida

BMC Bioinform., 2009

OnTheFly: a tool for automated document-based text annotation, data linking and network generation.

Georgios A. Pavlopoulos, Evangelos Pafilis, Michael Kuhn, Sean D. Hooper, Reinhard Schneider

Bioinform., 2009

jClust: a clustering and visualization toolbox.

Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida

Bioinform., 2009

2008

Arena3D: visualization of biological networks in 3D.

Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider

BMC Syst. Biol., 2008

A survey of visualization tools for biological network analysis.

Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider

BioData Min., 2008

An enhanced Markov clustering method for detecting protein complexes.

Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008