Sérgio Lifschitz

Orcid: 0000-0003-3073-3734

Affiliations:
  • Pontifical Catholic University of Rio de Janeiro, Brazil


According to our database1, Sérgio Lifschitz authored at least 99 papers between 1991 and 2023.

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Bibliography

2023
Intentional Semantics for Molecular Biology.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2023

A New Data Modeling Approach for Alignment-free Biological Applications.
Proceedings of the 38th Brazilian Symposium on Databases, 2023

Context-Aware Knowledge Graphs Exploratory Search.
Proceedings of the 38th Brazilian Symposium on Databases, 2023

Database Support for Online Social Network Analysis.
Proceedings of the 38th Brazilian Symposium on Databases, 2023

2022
Searching for Researchers: an Ontology-based NoSQL Database System Approach and Practical Implementation.
J. Inf. Data Manag., December, 2022

Regional patterns and networked behavior: interdisciplinary methods for identifying bots in the 2020 elections in Brazil.
Braz. J. Inf. Syst., 2022

Scientific Workflow Interactions: An Application to Cancer Gene Identification.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2022

An External Memory Approach for Large Genome De Novo Assembly.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2022

TuningChef: an approach for choosing the best cost-benefit database tuning actions.
Proceedings of the 37th Brazilian Symposium on Databases, 2022

A Study of Database Models for Social Network Analysis.
Proceedings of the 37th Brazilian Symposium on Databases, 2022

Autonomic Combination and Selection of Tuning Actions.
Proceedings of the 37th Brazilian Symposium on Databases, 2022

2021
Query co-planning for shared execution in key-value stores.
J. Inf. Data Manag., 2021

Outer-Tuning: an Ontology-based Extensible Framework for Supporting Database Automatic Tuning.
J. Inf. Data Manag., 2021

Tun-O<sub>CM</sub>: A model-driven approach to support database tuning decision making.
Decis. Support Syst., 2021

A Survey on Data-driven Performance Tuning for Big Data Analytics Platforms.
Big Data Res., 2021

Inferencing Relational Database Tuning Actions with OnDBTuning Ontology.
Proceedings of the 36th Brazilian Symposium on Databases, 2021

Genome variant calling workflow implementation and deployment in HPC infrastructure.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Efficient Out-of-Core Contig Generation.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2020

Query co-planning for shared execution in Key-Value Stores.
Proceedings of the 35th Brazilian Symposium on Databases, 2020

Evaluating Database Self-Tuning Strategies in a Comon Extensible Framework.
Proceedings of the 35th Brazilian Symposium on Databases, 2020

Streaming state management methods for real-time data deduplication.
Proceedings of the 35th Brazilian Symposium on Databases, 2020

From a Monolithic Big Data System to a Microservices Event-Driven Architecture.
Proceedings of the 46th Euromicro Conference on Software Engineering and Advanced Applications, 2020

Relational Text-Type for Biological Sequences.
Proceedings of the Advances in Conceptual Modeling, 2020

2019
Designing Graph Databases With GRAPHED.
J. Database Manag., 2019

Managing data provenance for bioinformatics workflows using AProvBio.
Int. J. Comput. Biol. Drug Des., 2019

Privacy and Transparency within the 4IR: Two faces of the same coin.
Proceedings of the Companion of The 2019 World Wide Web Conference, 2019

A Domain Framework Approach for Quality Feature Analysis of Genome Assemblies.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2019

K-mer Mapping and RDBMS Indexes.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2019

Outer-Tuning: an integration of rules, ontology and RDBMS.
Proceedings of the XV Brazilian Symposium on Information Systems, 2019

Towards a Technique for Extracting Relational Actors from Monolithic Applications.
Proceedings of the 34th Brazilian Symposium on Databases, 2019

An Ontological Perspective for Database Tuning Heuristics.
Proceedings of the Conceptual Modeling - 38th International Conference, 2019

Data Provenance Management of Bioinformatics Workflows in Federated Clouds.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

A New Approach for De Bruijn Graph Construction in De Novo Genome Assembling.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Mensageria: A Smart City Framework for Real-Time Analysis of Traffic Data Streams.
Proceedings of the Big Social Data and Urban Computing, 2018

SBBD - Para Que e Para Quem?
Proceedings of the XXXIII Simpósio Brasileiro de Banco de Dados, 2018

Database Tuning with Partial Indexes.
Proceedings of the XXXIII Simpósio Brasileiro de Banco de Dados, 2018

Partitioning Very Large de Bruijn Graphs for Genome Assembly.
Proceedings of the XXXIII Simpósio Brasileiro de Banco de Dados: Demos e WTDBD, 2018

Outer-Tuning: sintonia Fina Automática Baseada em Ontologia.
Proceedings of the XXXIII Simpósio Brasileiro de Banco de Dados: Demos e WTDBD, 2018

CM-OPL: An Ontology Pattern Language for Configuration Management Task.
Proceedings of the XI Seminar on Ontology Research in Brazil and II Doctoral and Masters Consortium on Ontologies, 2018

A Systematic Mapping of Software Engineering Approaches to Develop Big Data Systems.
Proceedings of the 44th Euromicro Conference on Software Engineering and Advanced Applications, 2018

2017
Particionamento como Ação de Sintonia Fina em Bancos de Dados Relacionais.
Proceedings of the XXXII Simpósio Brasileiro de Banco de Dados, 2017

Data provenance management for bioinformatics workflows using NoSQL database systems in a cloud computing environment.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

AProvBio: An architecture for data provenance in bioinformatics workflows using graph database.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Concepção e Desenvolvimento de um Serviço Distribuído de Coleta e Tratamento de Dados para Ambientes de Internet das Coisas.
Proceedings of the 31º Simpósio Brasileiro de Banco de Dados, 2016

Automatic Physical Design Tuning based on Hypothetical Plans.
Proceedings of the 31º Simpósio Brasileiro de Banco de Dados, 2016

An evaluation of data replication for bioinformatics workflows on NoSQL systems.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

K-mer Mapping and de Bruijn graphs: The case for velvet fragment assembly.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Projeto e implementação do framework Outer-tuning: auto sintonia e ontologia para bancos de dados relacionais [Design of the Outer-tuning framework: self-tuning and ontology for relational databases].
Proceedings of the annual conference on Brazilian Symposium on Information Systems, 2015

A study of genomic data provenance in NoSQL document-oriented database systems.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Improving Index Maintenance Using Decision Analysis.
J. Inf. Data Manag., 2014

On Using an Online, Automatic and Non-Intrusive Approach for Rewriting SQL Queries.
J. Inf. Data Manag., 2014

Storing provenance data of genome project workflows using graph database.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Genomic data persistency on a NoSQL database system.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Towards a Statistical Evaluation of PigLatin Joins.
J. Inf. Data Manag., 2013

Provenance in bioinformatics workflows.
BMC Bioinform., 2013

On Using an Automatic, Autonomous and Non-Intrusive Approach for Rewriting SQL Queries.
Proceedings of the XXVIII Simpósio Brasileiro de Banco de Dados - Short Papers, Recife, Pernambuco, Brasil, September 30, 2013

On defining metrics for elasticity of cloud databases.
Proceedings of the XXVIII Simpósio Brasileiro de Banco de Dados - Short Papers, Recife, Pernambuco, Brasil, September 30, 2013

Automatic capture of provenance data in genome project workflows.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Proactive Index Maintenance: Using Prediction Models for Improving Index Maintenance in Databases.
J. Inf. Data Manag., 2012

Design and Implementation of ProteinWorldDB.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2012

Autonomous re-indexing.
Proceedings of the ACM Symposium on Applied Computing, 2012

Managing data provenance in genome project workflows.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Dealing with reusability and reproducibility for scientific workflows.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes.
Bioinform., 2010

2009
A Knowledge Representation and Data Provenance Model to Self-Tuning Database Systems.
Proceedings of the 33rd Annual IEEE Software Engineering Workshop, 2009

Reindexação Automática em SGBDs Relacionais.
Proceedings of the XXIV Simpósio Brasileiro de Banco de Dados, 2009

Self-tuning e outros Self-* em SGBDs.
Proceedings of the XXIV Simpósio Brasileiro de Banco de Dados, 2009

Using transaction isolation levels for ensuring replicated database consistency in mobile computing environments.
Proceedings of the Eighth ACM International Workshop on Data Engineering for Wireless and Mobile Access, 2009

2008
A Practical Evaluation of BioProvider.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2008

BLAST Distributed Execution on Partitioned Databases with Primary Fragments.
Proceedings of the High Performance Computing for Computational Science, 2008

2007
A mechanism for replicated data consistency in mobile computing environments.
Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), 2007

A Conceptual Data Model Language for the Molecular Biology Domain.
Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007

Dealing with Some Conceptual Data Model Requirements for Biological Domains.
Proceedings of the 21st International Conference on Advanced Information Networking and Applications (AINA 2007), 2007

2006
Towards Autonomic Index Maintenance.
Proceedings of the XXI Simpósio Brasileiro de Banco de Dados, 2006

2005
Report on the 19<sup>th</sup> Brazilian symposium on databases (SBBD 2004).
SIGMOD Rec., 2005

Design and Implementation of a Global Self-tuning Architecture.
Proceedings of the 20° Simpósio Brasileiro de Bancos de Dados, 2005

Implementation of an Agent Architecture for Automated Index Tuning.
Proceedings of the 21st International Conference on Data Engineering Workshops, 2005

Autonomic Index Management.
Proceedings of the Second International Conference on Autonomic Computing (ICAC 2005), 2005

2004
An I/O Device Driver for Bioinformatics Tools: the case for BLAST.
Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

2003
Database Allocation Strategies for Parallel BLAST Evaluation on Clusters.
Distributed Parallel Databases, 2003

Index Self-tunning with Agent-based Databases.
CLEI Electron. J., 2003

A Conceptual Model for Molecular Biology Information.
Proceedings of the II Brazilian Workshop on Bioinformatics, 2003

Skew Handling for Parallel BLAST Processing.
Proceedings of the II Brazilian Workshop on Bioinformatics, 2003

Implementation Issues of Bio-AXS: An Object-oriented Framework for Integrating Biological Data and Applications.
Proceedings of the 7th International Database Engineering and Applications Symposium (IDEAS 2003), 2003

A Study of a Multi-Ring Buffer Management for BLAST.
Proceedings of the 14th International Workshop on Database and Expert Systems Applications (DEXA'03), 2003

2002
BLAST Implementation Issues on Workstation Clusters.
Proceedings of the I Brazilian Workshop on Bioinformatics, 2002

An Overview of Genomic Databases Research Issues.
Proceedings of the XVII Simpósio Brasileiro de Banco de Dados, 2002

Competitive Online Comparison for Parallel Joins.
Proceedings of the XVII Simpósio Brasileiro de Banco de Dados, 2002

2001
A Framework for Molecular Biology Data Integration.
Proceedings of the International Workshop on Information Integration on the Web, 2001

ARCOJP: Uma Arquitetura para Comparação de Junções Paralelas.
Proceedings of the XVI Simpósio Brasileiro de Banco de Dados, 2001

A Genome Databases Framework.
Proceedings of the Database and Expert Systems Applications, 12th International Conference, 2001

1999
An Object-Oriented Framework for the Parallel Join Operation.
Proceedings of the 10th International Workshop on Database & Expert Systems Applications, 1999

1998
A Probabilistic View of Datalog Parallelization.
Theor. Comput. Sci., 1998

HEROS: A Heterogeneous Object-Oriented Database System.
Proceedings of the Database and Expert Systems Applications, 9th International Conference, 1998

1997
Exploring Load Balancing in Parallel Processing of Recursive Queries.
Proceedings of the Euro-Par '97 Parallel Processing, 1997

1995
Practical Behavior of Parallelization Strategies for Datalog.
Proceedings of the Deductive and Object-Oriented Databases, 1995

1992
Aggregates over transitively closed relations.
Proceedings of the VIIIèmes Journées Bases de Données Avancées, 1992

1991
Computing some distance functions between polygons.
Pattern Recognit., 1991


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