Shanshan Li

According to our database, Shanshan Li authored at least 10 papers between 2023 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Multimodal geometric learning for antimicrobial peptide identification by leveraging alphafold2-predicted structures and surface features.

Zehua Sun, Jing Xu, Yumeng Zhang, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Hsin Hui Shen, Jiangning Song

Briefings Bioinform., May, 2025

Integrating Graph Convolutional Networks for Missing Gene Expression Imputation.

Ying Zhang, Hong-Jin Yu, Zihao Yan, Tong Pan, Yiwen Zhang, Yan Liu, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu

IEEE Trans. Comput. Biol. Bioinform., 2025

Structure-Directed Pan-Specific T-Cell Receptor-Peptide-Major Histocompatibility Complex Interaction Prediction.

Letao Gao, Yumeng Zhang, Fang Ge, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu

J. Chem. Inf. Model., 2025

2024

MLSNet: a deep learning model for predicting transcription factor binding sites.

Yuchuan Zhang, Zhikang Wang, Fang Ge, Xiaoyu Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu

Briefings Bioinform., November, 2024

Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects.

Xiaoyu Wang, Fuyi Li, Yiwen Zhang, Seiya Imoto, Hsin-Hui Shen, Shanshan Li, Yuming Guo, Jian Yang, Jiangning Song

Briefings Bioinform., September, 2024

GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction.

Mengmeng Gao, Daokun Zhang, Yi Chen, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Geoffrey I. Webb, Anh T. N. Nguyen, Lauren T. May, Jiangning Song

Comput. Biol. Medicine, 2024

2023

Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues.

Ying Zhang, Zhikang Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu

Bioinform., December, 2023

Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images.

Zhikang Wang, Qian Gao, Xiaoping Yi, Xinyu Zhang, Yiwen Zhang, Daokun Zhang, Pietro Liò, Chris Bain, Richard Bassed, Shanshan Li, Yuming Guo, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song

Comput. Methods Programs Biomed., November, 2023

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning.

Jiani Ma, Chen Li, Yiwen Zhang, Zhikang Wang, Shanshan Li, Yuming Guo, Lin Zhang, Hui Liu, Xin Gao, Jiangning Song

Bioinform., September, 2023

SMG: self-supervised masked graph learning for cancer gene identification.

Yan Cui, Zhikang Wang, Xiaoyu Wang, Yiwen Zhang, Ying Zhang, Tong Pan, Zhe Zhang, Shanshan Li, Yuming Guo, Tatsuya Akutsu, Jiangning Song

Briefings Bioinform., September, 2023