Pietro Liò

According to our database1, Pietro Liò authored at least 179 papers between 1998 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2018
Guest Editors' Introduction to the Special Section on the 14th International Conference on Computational Methods in Systems Biology (CMSB 2016).
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Stochastic Channel Switching of Frequency-Encoded Signals in Molecular Communication Networks.
IEEE Communications Letters, 2018

Introducing Curvature to the Label Space.
CoRR, 2018

Lesion Focused Super-Resolution.
CoRR, 2018

Deep Graph Infomax.
CoRR, 2018

Applications of molecular communications to medicine: a survey.
CoRR, 2018

Automatic Inference of Cross-modal Connection Topologies for X-CNNs.
CoRR, 2018

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
BMC Bioinformatics, 2018

A study on multi-omic oscillations in Escherichia coli metabolic networks.
BMC Bioinformatics, 2018

Parapred: antibody paratope prediction using convolutional and recurrent neural networks.
Bioinformatics, 2018

Parallel swarm intelligence strategies for large-scale clustering based on MapReduce with application to epigenetics of aging.
Appl. Soft Comput., 2018

Neural network fusion: a novel CT-MR aortic aneurysm image segmentation method.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Automatic Inference of Cross-Modal Connection Topologies for X-CNNs.
Proceedings of the Advances in Neural Networks - ISNN 2018, 2018

Using deep data augmentation training to address software and hardware heterogeneities in wearable and smartphone sensing devices.
Proceedings of the 17th ACM/IEEE International Conference on Information Processing in Sensor Networks, 2018

Terminal Sensitive Data Protection by Adjusting Access Time Bidirectionally and Automatically.
Proceedings of the 27th International Conference on Computer Communication and Networks, 2018

A Multi-modal Convolutional Neural Network Framework for the Prediction of Alzheimer's Disease.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Investigating Diagrammatic Reasoning with Deep Neural Networks.
Proceedings of the Diagrammatic Representation and Inference, 2018

2017
GenHap: A novel computational method based on genetic algorithms for haplotype assembly.
PeerJ PrePrints, 2017

NuChart-II: The road to a fast and scalable tool for Hi-C data analysis.
IJHPCA, 2017

Quantifying the Effects of Enforcing Disentanglement on Variational Autoencoders.
CoRR, 2017

Graph Attention Networks.
CoRR, 2017

Cross-modal Recurrent Models for Human Weight Objective Prediction from Multimodal Time-series Data.
CoRR, 2017

XFlow: 1D-2D Cross-modal Deep Neural Networks for Audiovisual Classification.
CoRR, 2017

Learning Rare Word Representations using Semantic Bridging.
CoRR, 2017

Bayesian Hybrid Matrix Factorisation for Data Integration.
CoRR, 2017

Comparative Study of Inference Methods for Bayesian Nonnegative Matrix Factorisation.
CoRR, 2017

DrugClust: A machine learning approach for drugs side effects prediction.
Computational Biology and Chemistry, 2017

Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization.
BMC Systems Biology, 2017

Opportunities for community awareness platforms in personal genomics and bioinformatics education.
Briefings in Bioinformatics, 2017

A multiplex network approach for the analysis of intracranial pressure and heart rate data in traumatic brain injured patients.
Applied Network Science, 2017

Comparative Study of Inference Methods for Bayesian Nonnegative Matrix Factorisation.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2017

Scientific Workflows on Clouds with Heterogeneous and Preemptible Instances.
Proceedings of the Parallel Computing is Everywhere, 2017

A big-data layered architecture for analyzing molecular communications systems in blood vessels.
Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, 2017

Bayesian Hybrid Matrix Factorisation for Data Integration.
Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, 2017

2016
Distance-Based Opportunistic Mobile Data Offloading.
Sensors, 2016

Computational Modeling, Formal Analysis, and Tools for Systems Biology.
PLoS Computational Biology, 2016

Applications of molecular communications to medicine: A survey.
Nano Comm. Netw., 2016

X-CNN: Cross-modal Convolutional Neural Networks for Sparse Datasets.
CoRR, 2016

Fast Bayesian Non-Negative Matrix Factorisation and Tri-Factorisation.
CoRR, 2016

Molecular multiplex network inference using Gaussian mixture hidden Markov models.
J. Complex Networks, 2016

Animal inference on human mitochondrial diseases.
Computational Biology and Chemistry, 2016

Multiplex methods provide effective integration of multi-omic data in genome-scale models.
BMC Bioinformatics, 2016

Muxstep: an open-source C ++ multiplex HMM library for making inferences on multiple data types.
Bioinformatics, 2016

Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.
Bioinformatics, 2016

How computer science can help in understanding the 3D genome architecture.
Briefings in Bioinformatics, 2016

Systems medicine of inflammaging.
Briefings in Bioinformatics, 2016

X-CNN: Cross-modal convolutional neural networks for sparse datasets.
Proceedings of the 2016 IEEE Symposium Series on Computational Intelligence, 2016

Warped Matrix Factorisation for Multi-view Data Integration.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2016

MolComML: The Molecular Communication Markup Language.
Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, 2016

Channel modelling of molecular communications across blood vessels and nerves.
Proceedings of the 2016 IEEE International Conference on Communications, 2016

Multilayer Data and Document Stratification for Comorbidity Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

2015
Analysis and design of molecular machines.
Theor. Comput. Sci., 2015

Modelling Circulating Tumour Cells for Personalised Survival Prediction in Metastatic Breast Cancer.
PLoS Computational Biology, 2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.
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Nucleic Acids Research, 2015

Comorbidity networks: beyond disease correlations.
J. Complex Networks, 2015

Network regularised Cox regression and multiplex network models to predict disease comorbidities and survival of cancer.
Computational Biology and Chemistry, 2015

CytoCom: a Cytoscape app to visualize, query and analyse disease comorbidity networks.
Bioinformatics, 2015

MeDuSa: a multi-draft based scaffolder.
Bioinformatics, 2015

DAPPER: a data-mining resource for protein-protein interactions.
BioData Mining, 2015

Advances in Artificial Life: Synthesis and Simulation of Living Systems: Editorial.
Artificial Life, 2015

Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

Multi omic oscillations in bacterial pathways.
Proceedings of the 2015 International Joint Conference on Neural Networks, 2015

Privacy Information Security Classification and Comparison between the Westerner and Chinese.
Proceedings of the International Conference on Identification, 2015

NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

Bioinformatics Challenges and Potentialities in Studying Extreme Environments.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
Directional communication with movement prediction in mobile wireless sensor networks.
Personal and Ubiquitous Computing, 2014

Forward and Reverse coding for chromosome transfer in bacterial nanonetworks.
Nano Comm. Netw., 2014

comoR: a software for disease comorbidity risk assessment.
J. Clinical Bioinformatics, 2014

Exploring the complexity of pathway-drug relationships using latent Dirichlet allocation.
Computational Biology and Chemistry, 2014

Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies.
BMC Bioinformatics, 2014

FisHiCal: an R package for iterative FISH-based calibration of Hi-C data.
Bioinformatics, 2014

A Molecular Communication System in Blood Vessels for Tumor Detection.
Proceedings of ACM The First Annual International Conference on Nanoscale Computing and Communication, 2014

Nodes Density Adaptive Opportunistic Forwarding Protocol for Intermittently Connected Networks.
Proceedings of the International Conference on Identification, 2014

The Bio-Inspired and Social Evolution of Node and Data in a Multilayer Network.
Proceedings of the DCNET 2014, 2014

Who Wrote This? Textual Modeling with Authorship Attribution in Big Data.
Proceedings of the 2014 IEEE International Conference on Data Mining Workshops, 2014

Computing Longevity: Insights from Controls.
Proceedings of the Formal Methods in Macro-Biology - First International Conference, 2014

NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Improving Literature-Based Discovery with Advanced Text Mining.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Applications of Network-based Survival Analysis Methods for Pathways Detection in Cancer.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Automated Detection of Fluorescent Probes in Molecular Imaging.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Drug Repurposing by Optimizing Mining of Genes Target Association.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

Endovascular Mobile Sensor Network for Detecting Circulating Tumoral Cells.
Proceedings of the 9th International Conference on Body Area Networks, 2014

2013
Pareto Optimality in Organelle Energy Metabolism Analysis.
IEEE/ACM Trans. Comput. Biology Bioinform., 2013

A review of experimental opportunities for molecular communication.
Nano Comm. Netw., 2013

Design and strain selection criteria for bacterial communication networks.
Nano Comm. Netw., 2013

A Location Prediction Algorithm for Mobile Communications Using Directional Antennas.
IJDSN, 2013

CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks.
Bioinformatics, 2013

It measures like me: An IoTs algorithm in WSNs based on heuristics behavior and clustering methods.
Ad Hoc Networks, 2013

Speeding up the transition to collective awareness.
Proceedings of the IEEE International Conference on Communications, 2013

Multi objective design for bacterial communication networks.
Proceedings of the IEEE International Conference on Communications, 2013

Pareto epsilon-dominance and identifiable solutions for BioCAD modeling.
Proceedings of the 50th Annual Design Automation Conference 2013, 2013

Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

Methodologies for Systems Medicine: Time to Join the Forces of Bioengineering and Bioinformatics.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

2012
Multiple Verification in Complex Biological Systems: The Bone Remodelling Case Study.
Trans. Computational Systems Biology, 2012

Multilevel Computational Modeling and Quantitative Analysis of Bone Remodeling.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Opportunistic routing through conjugation in bacteria communication nanonetwork.
Nano Comm. Netw., 2012

How to Compute with Metabolism in Bacteria?
ERCIM News, 2012

Disease processes as hybrid dynamical systems
Proceedings of the Proceedings First International Workshop on Hybrid Systems and Biology, 2012

An adaptive directional MAC protocol for ad hoc networks using directional antennas.
SCIENCE CHINA Information Sciences, 2012

Modelling osteomyelitis.
BMC Bioinformatics, 2012

Robust design of microbial strains.
Bioinformatics, 2012

Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling.
Proceedings of the Computational Methods in Systems Biology, 2012

Computing with Metabolic Machines.
Proceedings of the Turing-100, 2012

2011
Methodological Bridges for Multi-Level Systems.
Proceedings of the 2nd European Future Technologies Conference and Exhibition, 2011

A Combined Process Algebraic and Stochastic Approach to Bone Remodeling.
Electr. Notes Theor. Comput. Sci., 2011

Information dynamics algorithm for detecting communities in networks
CoRR, 2011

Multiple verification in computational modeling of bone pathologies
Proceedings of the Proceedings Third International Workshop on Computational Models for Cell Processes, 2011

Intra-City Urban Network and Traffic Flow Analysis from GPS Mobility Trace
CoRR, 2011

Biological principles for future internet architecture design.
IEEE Communications Magazine, 2011

Message from the workshop on the future of social networking.
Computer Communication Review, 2011

Parallel Hematopoietic Stem Cell Division Rate Estimation Using an Agent-Based Model on the Grid.
Proceedings of the 19th International Euromicro Conference on Parallel, 2011

Evolving Model of Opportunistic Routing in Delay Tolerant Networks.
Proceedings of the Seventh International Conference on Mobile Ad-hoc and Sensor Networks, 2011

Design of robust metabolic pathways.
Proceedings of the 48th Design Automation Conference, 2011

Osteoporosis: a multiscale modeling viewpoint.
Proceedings of the Computational Methods in Systems Biology, 9th International Conference, 2011

2010
Detection Probability Estimation of Directional Antennas and Omni-Directional Antennas.
Wireless Personal Communications, 2010

An integrated modelling approach for R5-X4 mutation and HAART therapy assessment.
Swarm Intelligence, 2010

Statistical mechanics of rumour spreading in network communities.
Proceedings of the International Conference on Computational Science, 2010

Risk perception and disease spread on social networks.
Proceedings of the International Conference on Computational Science, 2010

Cognitive network dynamics in chatlines.
Proceedings of the International Conference on Computational Science, 2010

Biologically inspired networking [Guest Editorial].
IEEE Network, 2010

Formal Synthetic Immunology.
ERCIM News, 2010

StochKit-FF: Efficient Systems Biology on Multicore Architectures
CoRR, 2010

Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy.
BMC Bioinformatics, 2010

StochKit-FF: Efficient Systems Biology on Multicore Architectures.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

Generic spaced DNA motif discovery using Genetic Algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2010

A New Approach for Epileptic Seizure Detection using Extreme Learning Machine.
Proceedings of the BIOSIGNALS 2010, 2010

Analysis and Optimization of C3 Photosynthetic Carbon Metabolism.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
Minimizing Detection Probability Routing in Ad Hoc Networks Using Directional Antennas.
EURASIP J. Wireless Comm. and Networking, 2009

Clinical bioinformatics for complex disorders: a schizophrenia case study.
BMC Bioinformatics, 2009

Trends in modeling Biomedical Complex Systems.
BMC Bioinformatics, 2009

Bio-inspired multi-agent data harvesting in a proactive urban monitoring environment.
Ad Hoc Networks, 2009

Substitution Matrices and Mutual Information Approaches to Modeling Evolution.
Proceedings of the Learning and Intelligent Optimization, Third International Conference, 2009

Identification of structurally important amino acids in proteins by graph-theoretic measures.
Proceedings of the ACM SIGKDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009

Using Mutual Information and Models of Evolution for Improved Pattern Petection.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Mathematical Model of HIV Superinfection and Comparative Drug Therapy.
Proceedings of the Artificial Immune Systems, 8th International Conference, 2009

A Case Study of ICA with Multi-scale PCA of Simulated Traffic Data.
Proceedings of the Artificial Neural Networks, 2009

Information Processing and Timing Mechanisms in Vision.
Proceedings of the Artificial Neural Networks, 2009

Size Matters: Variation in Personal Network Size, Personality and Effect on Information Transmission.
Proceedings of the 12th IEEE International Conference on Computational Science and Engineering, 2009

Formal Analysis of the Genetic Toggle.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

On optimising personal network size to manage information flow.
Proceedings of the Proceeding of the ACM First International Workshop on Complex Networks Meet Information & Knowledge Management, 2009

Fast centrality approximation in modular networks.
Proceedings of the Proceeding of the ACM First International Workshop on Complex Networks Meet Information & Knowledge Management, 2009

Combining Replicates and Nearby Species Data: A Bayesian Approach.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2009

2008
Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms.
PLoS Computational Biology, 2008

Human Heuristics for Autonomous Agents
CoRR, 2008

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.
BMC Bioinformatics, 2008

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes.
Briefings in Bioinformatics, 2008

Forensic genomics: kin privacy, driftnets and other open questions.
Proceedings of the 2008 ACM Workshop on Privacy in the Electronic Society, 2008

Social Networking for Pervasive Adaptation.
Proceedings of the Second IEEE International Conference on Self-Adaptive and Self-Organizing Systems, 2008

Bayesian Inference on Hidden Knowledge in High-Throughput Molecular Biology Data.
Proceedings of the PRICAI 2008: Trends in Artificial Intelligence, 2008

Inference on Missing Values in Genetic Networks Using High-Throughput Data.
Proceedings of the Evolutionary Computation, 2008

Identity Privacy Protection by Delayed Transmission in Pocket Switched Networks.
Proceedings of the 2008 IEEE/IPIP International Conference on Embedded and Ubiquitous Computing (EUC 2008), 2008

A Stochastic Single Cell Based Model of BrdU Measured Hematopoietic Stem Cell Kinetics.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

On low dimensional random projections and similarity search.
Proceedings of the 17th ACM Conference on Information and Knowledge Management, 2008

Searching for Glycomics Role in Stem Cell Development.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

Bayesian Phylogeny on Grid.
Proceedings of the Bioinformatics Research and Development, 2008

Combining Molecular and Physiological Data of Complex Disorders.
Proceedings of the Bioinformatics Research and Development, 2008

Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case Studies.
Proceedings of the Bioinformatics Research and Development, 2008

A Novel Mobility Model from a Heterogeneous Military MANET Trace.
Proceedings of the Ad-hoc, Mobile and Wireless Networks, 7th International Conference, 2008

A Stochastic Multi-agent Model of Stem Cell Proliferation.
Proceedings of the Cellular Automata, 2008

Contact Network Modeling of Flu Epidemics.
Proceedings of the Cellular Automata, 2008

2007
Bottleneck Genes and Community Structure in the Cell Cycle Network of S. pombe.
PLoS Computational Biology, 2007

MotifScorer: using a compendium of microarrays to identify regulatory motifs.
Bioinformatics, 2007

Forensic DNA and bioinformatics.
Briefings in Bioinformatics, 2007

Identifying Regulatory Sites Using Neighborhood Species.
Proceedings of the Evolutionary Computation, 2007

Beta Random Projection.
Proceedings of the Bio-Inspired Computing and Communication, 2007

Wavelet-Domain Statistics of Packet Switching Networks Near Traffic Congestion.
Proceedings of the Bio-Inspired Computing and Communication, 2007

Bio-Inspired Multi-agent Collaboration for Urban Monitoring Applications.
Proceedings of the Bio-Inspired Computing and Communication, 2007

Human Heuristics for Autonomous Agents.
Proceedings of the Bio-Inspired Computing and Communication, 2007

2006
A novel algorithm and web-based tool for comparing two alternative phylogenetic trees.
Bioinformatics, 2006

Keyword Searching in Structured Overlays Via Content Distance Addressing.
Proceedings of the Databases, 2006

Modeling Evolutionary Dynamics of HIV Infection.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2006

The Influence of Risk Perception in Epidemics: A Cellular Agent Model.
Proceedings of the Cellular Automata, 2006

2005
Keyword Searching in Hypercubic Manifolds.
Proceedings of the Fifth IEEE International Conference on Peer-to-Peer Computing (P2P 2005), 31 August, 2005

2004
Identification of DNA regulatory motifs using Bayesian variable selection.
Bioinformatics, 2004

2003
Wavelets in bioinformatics and computational biology: state of art and perspectives.
Bioinformatics, 2003

Dimensionality and Dependence Problems in Statistical Genomics.
Briefings in Bioinformatics, 2003

2000
Wavelet change-point prediction of transmembrane proteins.
Bioinformatics, 2000

Finding pathogenicity islands and gene transfer events in genome data.
Bioinformatics, 2000

1998
PASSML: combining evolutionary inference and protein secondary structure prediction.
Bioinformatics, 1998


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