Shou-Jiang Gao

According to our database, Shou-Jiang Gao authored at least 12 papers between 2009 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

ST2HE: enhancing spatial transcriptomics interpretability via virtual staining for histological annotation.

Zhentao Liu, Arun Das, Wen Meng, Yu-Chiao Chiu, Shou-Jiang Gao, Yufei Huang

Briefings Bioinform., 2026

2025

A comparative evaluation of computational models for RNA modification detection using nanopore sequencing with RNA004 chemistry.

Yongji Zou, Mian Umair Ahsan, Joe Chan, Wen Meng, Shou-Jiang Gao, Yufei Huang, Kai Wang

Briefings Bioinform., 2025

2024

Understanding YTHDF2-mediated mRNA degradation by m6A-BERT-Deg.

Tinghe Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang

Briefings Bioinform., May, 2024

ReguloGPT: Harnessing GPT for End-to-End Knowledge Graph Construction of Molecular Regulatory Pathways.

Xidong Wu, Sumin Jo, Yiming Zeng, Arun Das, Tinghe Zhang, Parth Patel, Yuanjing Wei, Lei Li, Shou-Jiang Gao, Jianqiu Zhang, Dexter Pratt, Yu-Chiao Chiu, Yufei Huang

Proceedings of the IEEE EMBS International Conference on Biomedical and Health Informatics, 2024

2022

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis.

Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang

Briefings Bioinform., 2022

2019

Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods.

Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang

PLoS Comput. Biol., 2019

2018

MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.

Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang

Nucleic Acids Res., 2018

2011

Computational prediction of microRNA regulatory pathways.

Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010

Improving performance of mammalian microRNA target prediction.

Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang

BMC Bioinform., 2010

Temporal clustering of gene expression patterns using short-time segments.

Nguyen T. Nguyen, Yufang Jin, Yufei Huang, Ying Ann Chiao, Shou-Jiang Gao, Merry Lindsey, Yidong Chen

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.

Jia Meng, Shou-Jiang Gao, Yufei Huang

Bioinform., 2009

A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling.

Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang

Proceedings of the International Joint Conferences on Bioinformatics, 2009