Shuhei Kimura

According to our database, Shuhei Kimura authored at least 34 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Inference of Genetic Networks from Steady-State and Pseudo Time-Series of Single-Cell Gene Expression Data using Modified Random Forests.

Shuhei Kimura, Hirotaka Kitajima, Masato Tokuhisa, Mariko Okada

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2023

2022

Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data.

Shuhei Kimura, Kazuki Sota, Masato Tokuhisa

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

2021

Feature Selection using Modified Null Importance.

Shuhei Kimura, Daichi Oda, Masato Tokuhisa

Proceedings of the IEEE Symposium Series on Computational Intelligence, 2021

Admittance Control-based Bilateral Control System Considering Position Error.

Shuhei Kimura, Takahiro Nozaki, Toshiyuki Murakami

Proceedings of the IEEE International Conference on Mechatronics, 2021

2020

Detection of Weak Relevant Variables using Random Forests.

Shuhei Kimura, Masato Tokuhisa

Proceedings of the 59th Annual Conference of the Society of Instrument and Control Engineers of Japan, 2020

2019

Inference of genetic networks using random forests: Assigning different weights for gene expression data.

Shuhei Kimura, Masato Tokuhisa, Mariko Okada

J. Bioinform. Comput. Biol., 2019

Feature Selection based on Random Forests and its Application to a Modeling of Sewage Treatment Plant.

Shuhei Kimura, Masato Tokuhisa, Akiyuki Uemura, Mariko Okada

Proceedings of the 2019 International Conference on Technologies and Applications of Artificial Intelligence, 2019

2018

Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data.

Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama

Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

2017

Inference of genetic networks from time-series of gene expression levels using random forests.

Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

2016

Simultaneous execution method of gene clustering and network inference.

Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama

Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

Recommending paragraphs of wikipedia pages as a travel guide.

Masato Tokuhisa, Yuuki Ishihara, Shuhei Kimura, Kenta Oku

Proceedings of the 9th IEEE International Workshop on Computational Intelligence and Applications, 2016

2015

Improvement of reliabilities of regulations using a hierarchical structure in a genetic network.

Shuhei Kimura, Mariko Okada-Hatakeyama

Proceedings of the 2015 International Joint Conference on Neural Networks, 2015

2014

Does return null matter?

Shuhei Kimura, Keisuke Hotta, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto

Proceedings of the 2014 Software Evolution Week, 2014

2013

Development of an efficient parameter estimation method for the inference of Vohradský's neural network models of genetic networks.

Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama

Proceedings of the 2013 International Joint Conference on Neural Networks, 2013

2012

Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations.

Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama

Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN), 2012

Move code refactoring with dynamic analysis.

Shuhei Kimura, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto

Proceedings of the 28th IEEE International Conference on Software Maintenance, 2012

2011

Computation of restoration of ligand response in the random kinetics of a prostate cancer cell signaling pathway.

Saswati Dana, Takashi Nakakuki, Mariko Hatakeyama, Shuhei Kimura, Soumyendu Raha

Comput. Methods Programs Biomed., 2011

Constrained multimodal function optimization using a simple evolutionary algorithm.

Shuhei Kimura, Koki Matsumura

Proceedings of the IEEE Congress on Evolutionary Computation, 2011

2010

Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations.

Shuhei Kimura, Yuichi Shiraishi, Mariko Okada

J. Bioinform. Comput. Biol., 2010

Inferring cluster-based networks from differently stimulated multiple time-course gene expression data.

Yuichi Shiraishi, Shuhei Kimura, Mariko Okada

Bioinform., 2010

Bootstrap Analysis of Genetic Networks inferred by the Method Using LPMs.

Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama

Proceedings of the Prodeedings of the 2010 International Conference on Computational Science and Its Applications, 2010

Effective parameter estimation for S-system models using LPMs and evolutionary algorithms.

Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama

Proceedings of the IEEE Congress on Evolutionary Computation, 2010

2009

Genetic network inference as a series of discrimination tasks.

Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama

Bioinform., 2009

Inference of genetic networks using linear programming machines: Application of a priori knowledge.

Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama

Proceedings of the International Joint Conference on Neural Networks, 2009

2008

Function approximation approach to the inference of reduced NGnet models of genetic networks.

Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hideki Maeda, Koki Matsumura, Mariko Hatakeyama

BMC Bioinform., 2008

Density estimation using crossover kernels and its application to a real-coded genetic algorithm.

Shuhei Kimura, Koki Matsumura

Proceedings of the IEEE Congress on Evolutionary Computation, 2008

2007

Inference of Genetic Networks using a Reduced NGnet Model.

Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama

Proceedings of the International Joint Conference on Neural Networks, 2007

2006

Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks.

Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama

Proceedings of the International Joint Conference on Neural Networks, 2006

2005

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.

Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya

Bioinform., 2005

Genetic algorithms using low-discrepancy sequences.

Shuhei Kimura, Koki Matsumura

Proceedings of the Genetic and Evolutionary Computation Conference, 2005

Inference of genetic networks using neural network models.

Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama

Proceedings of the IEEE Congress on Evolutionary Computation, 2005

2004

OBIYagns: a grid-based biochemical simulator with a parameter estimator.

Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya

Bioinform., 2004

2003

High dimensional function optimization using a new genetic local search suitable for parallel computers.

Shuhei Kimura, Akihiko Konagaya

Proceedings of the IEEE International Conference on Systems, 2003

Inference of S-system models of genetic networks using a genetic local search.

Shuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya

Proceedings of the IEEE Congress on Evolutionary Computation, 2003