Shuichi Onami

According to our database, Shuichi Onami authored at least 19 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Systematic analysis of cell morphodynamics in C. elegans early embryogenesis.

Yusuke Azuma, Hatsumi Okada, Shuichi Onami

Frontiers Bioinform., May, 2023

2022

PHi-C2: interpreting Hi-C data as the dynamic 3D genome state.

Soya Shinkai, Hiroya Itoga, Koji Kyoda, Shuichi Onami

Bioinform., October, 2022

Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model.

Eisuke Ito, Takaya Ueda, Ryo Takano, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa

Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2022, 2022

2021

Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes.

Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami

BMC Bioinform., 2021

2019

On Bringing Bioimaging Data into the Open (World).

Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

OME Core Ontology: An OWL-based Life Science Imaging Data Model.

Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

Development of an Integrated Visualization System for Phenotypic Character Networks.

Yosuke Onoue, Koji Kyoda, Miki Kioka, Kazutaka Baba, Shuichi Onami, Koji Koyamada

Proceedings of the IEEE Pacific Visualization Symposium, 2018

2017

Phenotype Analysis Method for Identification of Gene Functions Involved in Asymmetric Division of <i>Caenorhabditis elegans</i>.

Sihai Yang, Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen

J. Comput. Biol., 2017

Biologically constrained optimization based cell membrane segmentation in <i>C. elegans</i> embryos.

Yusuke Azuma, Shuichi Onami

BMC Bioinform., 2017

2016

Nuclear detection in 4D microscope images of a developing embryo using an enhanced probability map of top-ranked intensity-ordered descriptors.

Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen

IPSJ Trans. Comput. Vis. Appl., 2016

SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.

Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami

Bioinform., 2016

2015

Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data.

Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami

Bioinform., 2015

Nuclear detection in 4D microscope images using enhanced probability map of top-ranked intensity-ordered descriptors.

Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen

Proceedings of the 3rd IAPR Asian Conference on Pattern Recognition, 2015

2013

WDDD: Worm Developmental Dynamics Database.

Koji Kyoda, Eru Adachi, Eriko Masuda, Yoko Nagai, Yoko Suzuki, Taeko Oguro, Mitsuru Urai, Ryoko Arai, Mari Furukawa, Kumiko Shimada, Junko Kuramochi, Eriko Nagai, Shuichi Onami

Nucleic Acids Res., 2013

Evaluation of the effectiveness of simple nuclei-segmentation methods on Caenorhabditis elegans embryogenesis images.

Yusuke Azuma, Shuichi Onami

BMC Bioinform., 2013

2011

A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks.

Koji Kyoda, Kotaro Baba, Hiroaki Kitano, Shuichi Onami

Source Code Biol. Medicine, 2011

2007

A system for measuring cell division patterns of early <i>Caenorhabditis elegans</i> embryos by using image processing and object tracking.

Shugo Hamahashi, Hiroaki Kitano, Shuichi Onami

Syst. Comput. Jpn., 2007

2005

Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking.

Shugo Hamahashi, Shuichi Onami, Hiroaki Kitano

BMC Bioinform., 2005

2004

DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants.

Koji Kyoda, Kotaro Baba, Shuichi Onami, Hiroaki Kitano

Bioinform., 2004