Simon Heumos

According to our database, Simon Heumos authored at least 8 papers between 2019 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.

Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Y. Lee, Cole G. Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, Gur Yaari, Markus C. Kowarik, Sven Nahnsen, Steven H. Kleinstein

PLoS Comput. Biol., 2024

Cluster-efficient pangenome graph construction with nf-core/pangenome.

Simon Heumos, Michael L. Heuer, Friederike Hanssen, Lukas Heumos, Andrea Guarracino, Peter Heringer, Philipp Ehmele, Pjotr Prins, Erik Garrison, Sven Nahnsen

Bioinform., 2024

Pangenome graph layout by Path-Guided Stochastic Gradient Descent.

Simon Heumos, Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2024

Rapid GPU-Based Pangenome Graph Layout.

Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du, Simon Heumos, Andrea Guarracino, Giulia Guidi, Pjotr Prins, Erik Garrison, Zhiru Zhang

Proceedings of the International Conference for High Performance Computing, 2024

Wheeler Maps.

Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén

Proceedings of the LATIN 2024: Theoretical Informatics, 2024

2022

ODGI: understanding pangenome graphs.

Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2022

2021

Efficient dynamic variation graphs.

Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison

Bioinform., 2021

2019

SemanticGenomeGraphs.

Simon Heumos, Jerven T. Bolleman

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019