Sven Nahnsen

According to our database, Sven Nahnsen authored at least 11 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.

Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Y. Lee, Cole G. Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, Gur Yaari, Markus C. Kowarik, Sven Nahnsen, Steven H. Kleinstein

PLoS Comput. Biol., 2024

Cluster-efficient pangenome graph construction with nf-core/pangenome.

Simon Heumos, Michael L. Heuer, Friederike Hanssen, Lukas Heumos, Andrea Guarracino, Peter Heringer, Philipp Ehmele, Pjotr Prins, Erik Garrison, Sven Nahnsen

Bioinform., 2024

Pangenome graph layout by Path-Guided Stochastic Gradient Descent.

Simon Heumos, Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2024

2023

mlf-core: a framework for deterministic machine learning.

Lukas Heumos, Philipp Ehmele, Luis Kuhn Cuellar, Kevin Menden, Edmund Miller, Steffen Lemke, Gisela Gabernet, Sven Nahnsen

Bioinform., April, 2023

2022

A data management infrastructure for the integration of imaging and omics data in life sciences.

Luis Kuhn Cuellar, Andreas Friedrich, Gisela Gabernet, Luis de la Garza, Sven Fillinger, Adrian Seyboldt, Tobias Koch, Sven zur Oven-Krockhaus, Friederike Wanke, Sandra Richter, Wolfgang Maximilian Thaiss, Marius Horger, Nisar Malek, Klaus Harter, Michael Bitzer, Sven Nahnsen

BMC Bioinform., 2022

ODGI: understanding pangenome graphs.

Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2022

2021

Sustainable data analysis with Snakemake.

Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster

F1000Research, 2021

2020

Ten simple rules for providing effective bioinformatics research support.

Judit Kumuthini, Michael Chimenti, Sven Nahnsen, Alexander Peltzer, Rebone Meraba, Ross McFadyen, Gordon Wells, Deanne M. Taylor, Mark Maienschein-Cline, Jian-Liang Li, Jyothi Thimmapuram, Radha Murthy-Karuturi, Lyndon Zass

PLoS Comput. Biol., 2020

2018

Interactive Visualization for Large-Scale Multi-factorial Research Designs.

Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen

Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018

2017

qPortal - A science gateway for biomedical applications.

Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen

PeerJ Prepr., 2017

2012

In silico design of targeted SRM-based experiments.

Sven Nahnsen, Oliver Kohlbacher

BMC Bioinform., 2012