Andrea Guarracino

According to our database, Andrea Guarracino authored at least 7 papers between 2021 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Cluster-efficient pangenome graph construction with nf-core/pangenome.

Simon Heumos, Michael L. Heuer, Friederike Hanssen, Lukas Heumos, Andrea Guarracino, Peter Heringer, Philipp Ehmele, Pjotr Prins, Erik Garrison, Sven Nahnsen

Bioinform., 2024

Pangenome graph layout by Path-Guided Stochastic Gradient Descent.

Simon Heumos, Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2024

Rapid GPU-Based Pangenome Graph Layout.

Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du, Simon Heumos, Andrea Guarracino, Giulia Guidi, Pjotr Prins, Erik Garrison, Zhiru Zhang

Proceedings of the International Conference for High Performance Computing, 2024

2023

Optimal gap-affine alignment in <i>O</i>(<i>s</i>) space.

Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó

Bioinform., February, 2023

Unbiased pangenome graphs.

Erik Garrison, Andrea Guarracino

Bioinform., January, 2023

2022

ODGI: understanding pangenome graphs.

Andrea Guarracino, Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison

Bioinform., 2022

2021

BRIO: a web server for RNA sequence and structure motif scan.

Andrea Guarracino, Gerardo Pepe, Francesco Ballesio, Marta Adinolfi, Marco Pietrosanto, Elisa Sangiovanni, Ilio Vitale, Gabriele Ausiello, Manuela Helmer-Citterich

Nucleic Acids Res., 2021