Sisi Yuan

According to our database, Sisi Yuan authored at least 24 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Molecular graph-based invariant representation learning with environmental inference and subgraph generation for out-of-distribution generalization.

Hang Zhu, Sisi Yuan, Mingjing Tang, Guifei Zhou, Zhanxuan Hu, Zhaoyang Liu, Jin Li, Jianmin Wang, Chunyan Li

J. Cheminformatics, December, 2026

Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening.

Xiaoqing Lian, Pengsen Ma, Tengfeng Ma, Zhonghao Ren, Xibao Cai, Zhixiang Cheng, Bosheng Song, He Wang, Xiang Pan, Yangyang Chen, Sisi Yuan, Chen Lin

CoRR, March, 2026

RIGA-Fold: A General Framework for Protein Inverse Folding via Recurrent Interaction and Geometric Awareness.

Sisi Yuan, Jiehuang Chen, Junchuang Cai, Dong Xu, Xueliang Li, Zexuan Zhu, Junkai Ji

CoRR, February, 2026

Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation.

Dong Xu, Qihua Pan, Sisi Yuan, Jianqiang Li, Zexuan Zhu, Junkai Ji

CoRR, January, 2026

From Tokens to Blocks: A Block-Diffusion Perspective on Molecular Generation.

Qianwei Yang, Dong Xu, Zhangfan Yang, Sisi Yuan, Zexuan Zhu, Jianqiang Li, Junkai Ji

CoRR, January, 2026

Rethinking Drug-Drug Interaction Modeling as Generalizable Relation Learning.

Dong Xu, Jiantao Wu, Qihua Pan, Sisi Yuan, Zexuan Zhu, Junkai Ji

CoRR, January, 2026

XRepDDA: An Interpretable Drug-Disease Association Prediction Framework Leveraging Pretrained Chemical Language Models.

Chenyi Zhang, Yun Zuo, Qiao Ning, Sisi Yuan, Zhaohong Deng, Hongwei Yin, Anjing Zhao

J. Chem. Inf. Model., 2026

A systematic review of molecular representation learning foundation models.

Bosheng Song, Jiayi Zhang, Ying Liu, Yuansheng Liu, Jing Jiang, Sisi Yuan, Xia Zhen, Yiping Liu

Briefings Bioinform., 2026

2025

Enhancing Herbal Medicine-Drug Interaction Prediction Using Large Language Models.

Sisi Yuan, Zhecheng Zhou, Xinyuan Jin, Linlin Zhuo, Keqin Li

IEEE J. Biomed. Health Informatics, October, 2025

MODA: A Unified 3D Diffusion Framework for Multi-Task Target-Aware Molecular Generation.

Dong Xu, Zhangfan Yang, Sisi Yuan, Jenna Xinyi Yao, Jiangqiang Li, Junkai Ji

CoRR, July, 2025

DynamicDTA: Drug-Target Binding Affinity Prediction Using Dynamic Descriptors and Graph Representation.

Dan Luo, Jinyu Zhou, Le Xu, Sisi Yuan, Xuan Lin

CoRR, May, 2025

metaCDA: A Novel Framework for CircRNA-Driven Drug Discovery Utilizing Adaptive Aggregation and Meta-Knowledge Learning.

Li Peng, Huaping Li, Sisi Yuan, Tao Meng, Yifan Chen, Xiangzheng Fu, Dongsheng Cao

J. Chem. Inf. Model., 2025

GlySitePred: Identification of Glycation Modification Sites Based on Deep Feature Fusion and NCR-CC Sampling Technology.

Jiayue Liu, Yun Zuo, Youxu Tan, Wenying He, Sisi Yuan, Zhaohong Deng

J. Chem. Inf. Model., 2025

Adaptive symmetry-based adversarial perturbation augmentation for molecular graph representations with dual-fusion attention information.

Shuting Jin, Xiangrong Liu, Junlin Xu, Sisi Yuan, Hongxing Xiang, Lian Shen, Chunyan Li, Zhangming Niu, Yinhui Jiang

Inf. Fusion, 2025

Semantic substructure guided multiple objective molecular generation with discrete diffusion probabilistic model.

Shugao Chen, Bosheng Song, Ruizhe Chen, Lin Liu, Guifei Zhou, Sisi Yuan

Neurocomputing, 2025

An image-based protein-ligand binding representation learning framework via multi-level flexible dynamics trajectory pre-training.

Hongxin Xiang, Mingquan Liu, Linlin Hou, Shuting Jin, Jianmin Wang, Jun Xia, Wenjie Du, Sisi Yuan, Xiangzheng Fu, Xinyu Yang, Li Zeng, Lei Xu

Bioinform., 2025

GRAPE: graph-regularized protein language modeling unlocks TCR-epitope binding specificity.

Xiangzheng Fu, Li Peng, Haowen Chen, Mingqiang Rong, Yifan Chen, Dong-Sheng Cao, Sisi Yuan, Aiping Lu

Briefings Bioinform., 2025

2021

The Design of Buttons in MMO Mobile Game's Battle Interface.

Sisi Yuan, Jia-Sheng Hu, Zun-gui Lu, Zhang-jian Wei, Zhipeng Hu

Proceedings of the HCI in Games: Experience Design and Game Mechanics, 2021

Research on User Experience Optimization of Tutorial Design for Battle Royale Games Based on Grey AHP Theory.

Jinghan Lin, Wei Zhou, Sisi Yuan

Proceedings of the HCI in Games: Experience Design and Game Mechanics, 2021

A Specific Measurable Model - How Can Test Results be Influenced by Interactive Prototypes and Design Manuscripts?

Xiang Gao, Nian Liu, Yong-Cheng Liu, Sisi Yuan, Zhi-Peng Hu

Proceedings of the HCI in Games: Experience Design and Game Mechanics, 2021

2018

How to Block the Malicious Access to Android External Storage.

Sisi Yuan, Yuewu Wang, Pingjian Wang, Lingguang Lei, Quan Zhou, Jun Li

Proceedings of the Information Security and Cryptology - ICISC 2018, 2018

2017

Multi-Objective Evolutionary Algorithm Based on Decomposition for Energy-aware Scheduling in Heterogeneous Computing Systems.

Sisi Yuan, Gaoshan Deng, Quanxi Feng, Pan Zheng, Tao Song

J. Univers. Comput. Sci., 2017

2015

Identification of cytokine via an improved genetic algorithm.

Xiangxiang Zeng, Sisi Yuan, Xianxian Huang, Quan Zou

Frontiers Comput. Sci., 2015

2014

Decision Tree Classification Model for Popularity Forecast of Chinese Colleges.

Xiangxiang Zeng, Sisi Yuan, You Li, Quan Zou

J. Appl. Math., 2014