Bosheng Song

According to our database, Bosheng Song authored at least 65 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

PEB-DDI: A Task-Specific Dual-View Substructural Learning Framework for Drug-Drug Interaction Prediction.

Xiangzhen Shen, Zimeng Li, Yuansheng Liu, Bosheng Song, Xiangxiang Zeng

IEEE J. Biomed. Health Informatics, January, 2024

2023

Hybrid neural-like P systems with evolutionary channels for multiple brain metastases segmentation.

Jie Xue, Qi Li, Xiyu Liu, Yujie Guo, Jie Lu, Bosheng Song, Pu Huang, Qiong An, Guanzhong Gong, Dengwang Li

Pattern Recognit., October, 2023

Tissue P Systems With States in Cells.

Bosheng Song, Kenli Li, David Orellana-Martín, Xiangxiang Zeng, Mario J. Pérez-Jiménez

IEEE Trans. Computers, September, 2023

Sequence Alignment/Map format: a comprehensive review of approaches and applications.

Yuansheng Liu, Xiangzhen Shen, Yongshun Gong, Yiping Liu, Bosheng Song, Xiangxiang Zeng

Briefings Bioinform., September, 2023

Spiking neural P systems with weights and delays on synapses.

Yanyan Li, Bosheng Song, Xiangxiang Zeng

Theor. Comput. Sci., August, 2023

KG-MTL: Knowledge Graph Enhanced Multi-Task Learning for Molecular Interaction.

Tengfei Ma, Xuan Lin, Bosheng Song, Philip S. Yu, Xiangxiang Zeng

IEEE Trans. Knowl. Data Eng., July, 2023

Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction.

Xuan Lin, Lichang Dai, Yafang Zhou, Zu-Guo Yu, Wen Zhang, Jian-Yu Shi, Dong-Sheng Cao, Li Zeng, Haowen Chen, Bosheng Song, Philip S. Yu, Xiangxiang Zeng

Briefings Bioinform., July, 2023

Spiking neural P system with synaptic vesicles and applications in multiple brain metastasis segmentation.

Jie Xue, Deting Kong, Liwen Ren, Bosheng Song, Xiyu Liu, Guanzhong Gong, Dengwang Li, Hongyan Zhang

Inf. Sci., May, 2023

Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder.

Jing Jiang, Junlin Xu, Yuansheng Liu, Bosheng Song, Xiulan Guo, Xiangxiang Zeng, Quan Zou

Briefings Bioinform., May, 2023

Hypergraph-Based Numerical Neural-Like P Systems for Medical Image Segmentation.

Jie Xue, Liwen Ren, Bosheng Song, Yujie Guo, Jie Lu, Xiyu Liu, Guanzhong Gong, Dengwang Li

IEEE Trans. Parallel Distributed Syst., April, 2023

Tissue P systems with evolutional communication rules with two objects in the left-hand side.

David Orellana-Martín, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez

Nat. Comput., March, 2023

Monodirectional evolutional symport tissue P systems with channel states and cell division.

Bosheng Song, Kenli Li, Xiangxiang Zeng, Mario J. Pérez-Jiménez, Claudio Zandron

Sci. China Inf. Sci., March, 2023

On the computational efficiency of tissue P systems with evolutional symport/antiport rules.

Linqiang Pan, Bosheng Song, Claudio Zandron

Knowl. Based Syst., February, 2023

Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity Prediction.

Xixi Yang, Zhangming Niu, Yuansheng Liu, Bosheng Song, Weiqiang Lu, Li Zeng, Xiangxiang Zeng

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Learning to Denoise Unreliable Interactions for Link Prediction on Biomedical Knowledge Graph.

Tengfei Ma, Yujie Chen, Wen Tao, Dashun Zheng, Xuan Lin, Patrick Cheong-lao Pang, Yiping Liu, Yijun Wang, Bosheng Song, Xiangxiang Zeng

CoRR, 2023

2022

Monodirectional Evolutional Symport Tissue P Systems With Promoters and Cell Division.

Bosheng Song, Kenli Li, Xiangxiang Zeng

IEEE Trans. Parallel Distributed Syst., 2022

Rule synchronization for monodirectional tissue-like P systems with channel states.

Yanyan Li, Bosheng Song, Xiangxiang Zeng

Inf. Comput., 2022

A Survey of Nature-Inspired Computing: Membrane Computing.

Bosheng Song, Kenli Li, David Orellana-Martín, Mario J. Pérez-Jiménez, Ignacio Pérez-Hurtado

ACM Comput. Surv., 2022

Predicting ncRNA-protein interactions based on dual graph convolutional network and pairwise learning.

Linlin Zhuo, Bosheng Song, Yuansheng Liu, Zejun Li, Xiangzheng Fu

Briefings Bioinform., 2022

Learning spatial structures of proteins improves protein-protein interaction prediction.

Bosheng Song, Xiaoyan Luo, Xiaoli Luo, Yuansheng Liu, Zhangming Niu, Xiangxiang Zeng

Briefings Bioinform., 2022

2021

Monodirectional Tissue P Systems With Promoters.

Bosheng Song, Xiangxiang Zeng, Min Jiang, Mario J. Pérez-Jiménez

IEEE Trans. Cybern., 2021

Solving a PSPACE-complete problem by symport/antiport P systems with promoters and membrane division.

Bosheng Song, Xiangxiang Zeng

J. Membr. Comput., 2021

Monodirectional tissue P systems with channel states.

Bosheng Song, Xiangxiang Zeng, Alfonso Rodríguez-Patón

Inf. Sci., 2021

Rule synchronization for tissue P systems.

Bosheng Song, Linqiang Pan

Inf. Comput., 2021

The computational power of monodirectional tissue P systems with symport rules.

Bosheng Song, Shengye Huang, Xiangxiang Zeng

Inf. Comput., 2021

Time-free Solution to Independent Set Problem using P Systems with Active Membranes.

Yu Jin, Bosheng Song, Yanyan Li, Ying Zhu

Fundam. Informaticae, 2021

Tuning Frontiers of Efficiency in Tissue P Systems with Evolutional Communication Rules.

David Orellana-Martín, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez

Complex., 2021

MUFFIN: multi-scale feature fusion for drug-drug interaction prediction.

Yujie Chen, Tengfei Ma, Xixi Yang, Jianmin Wang, Bosheng Song, Xiangxiang Zeng

Bioinform., 2021

Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison.

Bosheng Song, Fen Li, Yuansheng Liu, Xiangxiang Zeng

Briefings Bioinform., 2021

Molecular design in drug discovery: a comprehensive review of deep generative models.

Yu Cheng, Yongshun Gong, Yuansheng Liu, Bosheng Song, Quan Zou

Briefings Bioinform., 2021

2020

Cell-like P systems with polarizations and minimal rules.

Linqiang Pan, David Orellana-Martín, Bosheng Song, Mario J. Pérez-Jiménez

Theor. Comput. Sci., 2020

P systems with symport/antiport rules: When do the surroundings matter?

David Orellana-Martín, Miguel Ángel Martínez-del-Amor, Luis Valencia-Cabrera, Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez

Theor. Comput. Sci., 2020

Time-freeness and clock-freeness and related concepts in P systems.

Artiom Alhazov, Rudolf Freund, Sergiu Ivanov, Linqiang Pan, Bosheng Song

Theor. Comput. Sci., 2020

Tissue P systems with promoter simulation with MeCoSim and P-Lingua framework.

Luis Valencia-Cabrera, Bosheng Song

J. Membr. Comput., 2020

The computational power of cell-like P systems with one protein on membrane.

Bosheng Song, Xiaoyan Luo, Luis Valencia-Cabrera, Xiangxiang Zeng

J. Membr. Comput., 2020

Cell-like P systems with evolutional symport/antiport rules and membrane creation.

Bosheng Song, Kenli Li, David Orellana-Martín, Luis Valencia-Cabrera, Mario J. Pérez-Jiménez

Inf. Comput., 2020

P Systems with Rule Production and Removal.

Linqiang Pan, Bosheng Song

Fundam. Informaticae, 2020

2018

Language generating alphabetic flat splicing P systems.

Linqiang Pan, Bosheng Song, Atulya K. Nagar, K. G. Subramanian

Theor. Comput. Sci., 2018

On Distributed Solution to SAT by Membrane Computing.

Henry N. Adorna, Linqiang Pan, Bosheng Song

Int. J. Comput. Commun. Control, 2018

The Computational Complexity of Tissue P Systems with Evolutional Symport/Antiport Rules.

Linqiang Pan, Bosheng Song, Luis Valencia-Cabrera, Mario J. Pérez-Jiménez

Complex., 2018

On Languages Generated by Context-Free Matrix Insertion-Deletion Systems with Exo-Operations.

Bosheng Song, Fei Xu, Linqiang Pan

Proceedings of the Enjoying Natural Computing, 2018

An Overview of 2D Picture Array Generating Models Based on Membrane Computing.

K. G. Subramanian, Sastha Sriram, Bosheng Song, Linqiang Pan

Proceedings of the Reversibility and Universality, 2018

2017

A time-free uniform solution to subset sum problem by tissue P systems with cell division.

Bosheng Song, Tao Song, Linqiang Pan

Math. Struct. Comput. Sci., 2017

Tissue-like P systems with evolutional symport/antiport rules.

Bosheng Song, Cheng Zhang, Linqiang Pan

Inf. Sci., 2017

An efficient time-free solution to QSAT problem using P systems with proteins on membranes.

Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan

Inf. Comput., 2017

Tissue P Systems with Rule Production/Removal.

Linqiang Pan, Bosheng Song, Gexiang Zhang

Proceedings of the Membrane Computing, 2017

Simulating Evolutional Symport/Antiport by Evolution-Communication and vice versa in Tissue P Systems with Parallel Communication.

Henry N. Adorna, Artiom Alhazov, Linqiang Pan, Bosheng Song

Proceedings of the Membrane Computing, 2017

Derivation Languages of Splicing P Systems.

Kalpana Mahalingam, Prithwineel Paul, Bosheng Song, Linqiang Pan, K. G. Subramanian

Proceedings of the Bio-inspired Computing: Theories and Applications, 2017

2016

The computational power of tissue-like P systems with promoters.

Bosheng Song, Linqiang Pan

Theor. Comput. Sci., 2016

Flat maximal parallelism in P systems with promoters.

Linqiang Pan, Gheorghe Paun, Bosheng Song

Theor. Comput. Sci., 2016

An efficient time-free solution to SAT problem by P systems with proteins on membranes.

Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan

J. Comput. Syst. Sci., 2016

Tissue P Systems with Protein on Cells.

Bosheng Song, Linqiang Pan, Mario J. Pérez-Jiménez

Fundam. Informaticae, 2016

Membrane fission: A computational complexity perspective.

Luis F. Macías-Ramos, Bosheng Song, Luis Valencia-Cabrera, Linqiang Pan, Mario J. Pérez-Jiménez

Complex., 2016

Rewriting P Systems with Flat-Splicing Rules.

Linqiang Pan, Bosheng Song, K. G. Subramanian

Proceedings of the Membrane Computing - 17th International Conference, CMC 2016, Milan, 2016

An Improved Algorithm for Constructing Binary Trees Using the Traversal Sequences.

Fangxiu Wang, Kang Zhou, Huaqing Qi, Bosheng Song

Proceedings of the Bio-inspired Computing - Theories and Applications, 2016

Improved Multi-step Iterative Algorithms for the Fixed Points of Strongly Pseudo-Contractive Mappings.

Jiangrong Liu, Kang Zhou, Shan Zeng, Huaqing Qi, Bosheng Song, Tingfang Wu

Proceedings of the Bio-inspired Computing - Theories and Applications, 2016

A Multi-objective Optimization Algorithm Based on Tissue P System for VRPTW.

Wenbo Dong, Kang Zhou, Huaqing Qi, Cheng He, Jun Zhang, Bosheng Song

Proceedings of the Bio-inspired Computing - Theories and Applications, 2016

Matrix Flat Splicing Systems.

Rodica Ceterchi, Linqiang Pan, Bosheng Song, K. G. Subramanian

Proceedings of the Bio-inspired Computing - Theories and Applications, 2016

2015

Computational efficiency and universality of timed P systems with active membranes.

Bosheng Song, Linqiang Pan

Theor. Comput. Sci., 2015

Computational efficiency and universality of timed P systems with membrane creation.

Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan

Soft Comput., 2015

Time-free solution to SAT problem by P systems with active membranes and standard cell division rules.

Bosheng Song, Tao Song, Linqiang Pan

Nat. Comput., 2015

A P_Lingua Based Simulator for P Systems with Symport/Antiport Rules.

Luis F. Macías-Ramos, Luis Valencia-Cabrera, Bosheng Song, Tao Song, Linqiang Pan, Mario J. Pérez-Jiménez

Fundam. Informaticae, 2015

Efficient solutions to hard computational problems by P systems with symport/antiport rules and membrane division.

Bosheng Song, Mario J. Pérez-Jiménez, Linqiang Pan

Biosyst., 2015

2011

DNA Self-assembly Model for Matrix Addition Problem.

Zhixiang Yin, Bosheng Song

J. Comput., 2011

2010

Plasmid DNA computing model of 0-1 programming problem.

Zhixiang Yin, Hua Chen, Bosheng Song

Proceedings of the Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 2010