Songjian Lu

According to our database, Songjian Lu authored at least 25 papers between 2004 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network.

Lifan Liang, Kunju Zhu, Junyan Tao, Songjian Lu

PLoS Comput. Biol., 2021

2020

BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization.

Lifan Liang, Kunju Zhu, Songjian Lu

Bioinform., 2020

2019

Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.

Chunhui Cai, Gregory F. Cooper, Kevin N. Lu, Xiaojun Ma, Shuping Xu, Zhenlong Zhao, Xueer Chen, Yifan Xue, Adrian V. Lee, Nathan Clark, Vicky Chen, Songjian Lu, Lujia Chen, Liyue Yu, Harry Hochheiser, Xia Jiang, Q. Jane Wang, Xinghua Lu

PLoS Comput. Biol., 2019

Noisy and Incomplete Boolean Matrix Factorizationvia Expectation Maximization.

Lifan Liang, Songjian Lu

CoRR, 2019

Integrating data and knowledge to identify functional modules of genes: a multilayer approach.

Lifan Liang, Vicky Chen, Kunju Zhu, Xiaonan Fan, Xinghua Lu, Songjian Lu

BMC Bioinform., 2019

Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information.

Xiao-Nan Fan, Shao-Wu Zhang, Song-Yao Zhang, Kunju Zhu, Songjian Lu

BMC Bioinform., 2019

2016

An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.

Songjian Lu, Gunasheil Mandava, Gaibo Yan, Xinghua Lu

Algorithms Mol. Biol., 2016

2015

Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.

Songjian Lu, Kevin N. Lu, Shi-Yuan Cheng, Bo Hu, Xiaojun Ma, Nicholas Nystrom, Xinghua Lu

PLoS Comput. Biol., 2015

2014

An exact algorithm for the weighed mutually exclusive maximum set cover problem.

Songjian Lu, Xinghua Lu

CoRR, 2014

2013

An exact algorithm with the time complexity of $O^*(1.299^m)$ for the weighed mutually exclusive set cover problem

Songjian Lu, Xinghua Lu

CoRR, 2013

Using graph model to find transcription factor modules: the hitting set problem and an exact algorithm.

Songjian Lu, Xinghua Lu

Algorithms Mol. Biol., 2013

2012

Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching.

Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang

ACM Trans. Algorithms, 2012

2011

Improved deterministic algorithms for weighted matching and packing problems.

Jianer Chen, Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang

Theor. Comput. Sci., 2011

A graph model and an exact algorithm for finding transcription factor modules.

Songjian Lu, Xinghua Lu

Proceedings of the ACM International Conference on Bioinformatics, 2011

2009

An Improved Parameterized Algorithm for the Minimum Node Multiway Cut Problem.

Jianer Chen, Yang Liu, Songjian Lu

Algorithmica, 2009

Improved Parameterized Set Splitting Algorithms: A Probabilistic Approach.

Jianer Chen, Songjian Lu

Algorithmica, 2009

Improved Deterministic Algorithms for Weighted Matching and Packing Problems.

Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang

Proceedings of the Theory and Applications of Models of Computation, 6th Annual Conference, 2009

2008

Improved algorithms for feedback vertex set problems.

Jianer Chen, Fedor V. Fomin, Yang Liu, Songjian Lu, Yngve Villanger

J. Comput. Syst. Sci., 2008

A fixed-parameter algorithm for the directed feedback vertex set problem.

Jianer Chen, Yang Liu, Songjian Lu, Barry O'Sullivan, Igor Razgon

J. ACM, 2008

2007

Finding Pathway Structures in Protein Interaction Networks.

Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze

Algorithmica, 2007

Improved algorithms for path, matching, and packing problems.

Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang

Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2007

Directed Feedback Vertex Set Problem is FPT.

Jianer Chen, Yang Liu, Songjian Lu

Proceedings of the Structure Theory and FPT Algorithmics for Graphs, Digraphs and Hypergraphs, 08.07., 2007

Improved Algorithms for Weighted and Unweighted Set Splitting Problems.

Jianer Chen, Songjian Lu

Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

2006

Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms.

Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze

Proceedings of the Parameterized and Exact Computation, Second International Workshop, 2006

2004

Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.

Sing-Hoi Sze, Songjian Lu, Jianer Chen

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004