Stanislaw Dunin-Horkawicz

According to our database, Stanislaw Dunin-Horkawicz authored at least 13 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models.

Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz

Bioinform., October, 2023

2022

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins.

Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz

Briefings Bioinform., 2022

2021

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.

Vasilina Zayats, Agata P. Perlinska, Aleksandra I. Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna I. Sulkowska

PLoS Comput. Biol., 2021

A library of coiled-coil domains: from regular bundles to peculiar twists.

Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz

Bioinform., 2021

2020

Self-analysis of repeat proteins reveals evolutionarily conserved patterns.

Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna

BMC Bioinform., 2020

2019

DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences.

Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz

Bioinform., 2019

RRMdb - an evolutionary-oriented database of RNA recognition motif sequences.

Martyna Nowacka, Pietro Boccaletto, Elzbieta Jankowska, Tomasz Jarzynka, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz

Database J. Biol. Databases Curation, 2019

2018

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.

Pietro Boccaletto, Marcin Magnus, Catarina Almeida, Adriana Zyla, Astha Astha, Radoslaw Pluta, Blazej Baginski, Elzbieta Jankowska, Stanislaw Dunin-Horkawicz, Tomasz K. Wirecki, Michal J. Boniecki, Filip Stefaniak, Janusz M. Bujnicki

Nucleic Acids Res., 2018

2015

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.

Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki

BMC Bioinform., 2015

2013

MODOMICS: a database of RNA modification pathways - 2013 update.

Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean

Nucleic Acids Res., 2013

2009

MODOMICS: a database of RNA modification pathways, update 2008

Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother

Nucleic Acids Res., 2009

2007

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.

Karolina L. Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M. Bujnicki

BMC Bioinform., 2007

2006

MODOMICS: a database of RNA modification pathways.

Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki

Nucleic Acids Res., 2006