Janusz M. Bujnicki

According to our database1, Janusz M. Bujnicki authored at least 49 papers between 1999 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:

On csauthors.net:


DNAmoreDB, a database of DNAzymes.
Nucleic Acids Res., 2021

RNAProbe: a web server for normalization and analysis of RNA structure probing data.
Nucleic Acids Res., 2020

RNA 3D structure prediction guided by independent folding of homologous sequences.
BMC Bioinform., 2019

RRMdb - an evolutionary-oriented database of RNA recognition motif sequences.
Database J. Biol. Databases Curation, 2019

MODOMICS: a database of RNA modification pathways. 2017 update.
Nucleic Acids Res., 2018

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.
Nucleic Acids Res., 2018

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.
Nucleic Acids Res., 2016

NPDock: a web server for protein-nucleic acid docking.
Nucleic Acids Res., 2015

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.
BMC Bioinform., 2015

GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.
Bioinform., 2015

RNA Bricks - a database of RNA 3D motifs and their interactions.
Nucleic Acids Res., 2014

Bioinformatics and Computational Biology in Poland.
PLoS Comput. Biol., 2013

QA-RecombineIt: a server for quality assessment and recombination of protein models.
Nucleic Acids Res., 2013

RNApathwaysDB - a database of RNA maturation and decay pathways.
Nucleic Acids Res., 2013

MODOMICS: a database of RNA modification pathways - 2013 update.
Nucleic Acids Res., 2013

Intrinsic Disorder in the Human Spliceosomal Proteome.
PLoS Comput. Biol., 2012

RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
BMC Bioinform., 2012

The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement.
BMC Bioinform., 2012

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins.
BMC Bioinform., 2012

Molecular evolution of dihydrouridine synthases.
BMC Bioinform., 2012

MetalionRNA: computational predictor of metal-binding sites in RNA structures.
Bioinform., 2012

RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes.
Bioinform., 2012

A toolbox for developing bioinformatics software.
Briefings Bioinform., 2012

REPAIRtoire - a database of DNA repair pathways.
Nucleic Acids Res., 2011

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking.
BMC Bioinform., 2011

ModeRNA server: an online tool for modeling RNA 3D structures.
Bioinform., 2011

RNA tertiary structure prediction with ModeRNA.
Briefings Bioinform., 2011

ModeRNA builds RNA 3D Models from Template Structures.
ERCIM News, 2010

FILTREST3D: discrimination of structural models using restraints from experimental data.
Bioinform., 2010

MODOMICS: a database of RNA modification pathways, update 2008
Nucleic Acids Res., 2009

Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors.
Algorithms, 2009

MetaMQAP: A meta-server for the quality assessment of protein models.
BMC Bioinform., 2008

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
BMC Bioinform., 2007

PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
Bioinform., 2007

I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.
Bioinform., 2007

MODOMICS: a database of RNA modification pathways.
Nucleic Acids Res., 2006

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
BMC Bioinform., 2005

DNase II is a member of the phospholipase D superfamily.
Bioinform., 2005

COLORADO3D, a web server for the visual analysis of protein structures.
Nucleic Acids Res., 2004

Geometric Analysis of Cross-Linkability for Protein Fold Discrimination.
Proceedings of the Biocomputing 2004, 2004

GeneSilico protein structure prediction meta-server.
Nucleic Acids Res., 2003

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure.
Nucleic Acids Res., 2003

Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of <i>S</i>-adenosylmethionine to three crystal structures.
BMC Bioinform., 2003

STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

RNA: (guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited - bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
BMC Bioinform., 2002

Fold-recognition detects an error in the Protein Data Bank.
Bioinform., 2002

mRNA: guanine-<i>N</i>7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships.
BMC Bioinform., 2001

Structure prediction meta server.
Bioinform., 2001

Comparison of protein structures reveals monophyletic origin of AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation.
Silico Biol., 1999