Janusz M. Bujnicki

According to our database1, Janusz M. Bujnicki authored at least 49 papers between 1999 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2021
DNAmoreDB, a database of DNAzymes.
Nucleic Acids Res., 2021

2020
RNAProbe: a web server for normalization and analysis of RNA structure probing data.
Nucleic Acids Res., 2020

2019
RNA 3D structure prediction guided by independent folding of homologous sequences.
BMC Bioinform., 2019

RRMdb - an evolutionary-oriented database of RNA recognition motif sequences.
Database J. Biol. Databases Curation, 2019

2018
MODOMICS: a database of RNA modification pathways. 2017 update.
Nucleic Acids Res., 2018

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.
Nucleic Acids Res., 2018

2016
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.
Nucleic Acids Res., 2016

2015
NPDock: a web server for protein-nucleic acid docking.
Nucleic Acids Res., 2015

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.
BMC Bioinform., 2015

GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.
Bioinform., 2015

2014
RNA Bricks - a database of RNA 3D motifs and their interactions.
Nucleic Acids Res., 2014

2013
Bioinformatics and Computational Biology in Poland.
PLoS Comput. Biol., 2013

QA-RecombineIt: a server for quality assessment and recombination of protein models.
Nucleic Acids Res., 2013

RNApathwaysDB - a database of RNA maturation and decay pathways.
Nucleic Acids Res., 2013

MODOMICS: a database of RNA modification pathways - 2013 update.
Nucleic Acids Res., 2013

2012
Intrinsic Disorder in the Human Spliceosomal Proteome.
PLoS Comput. Biol., 2012

RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
BMC Bioinform., 2012

The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement.
BMC Bioinform., 2012

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins.
BMC Bioinform., 2012

Molecular evolution of dihydrouridine synthases.
BMC Bioinform., 2012

MetalionRNA: computational predictor of metal-binding sites in RNA structures.
Bioinform., 2012

RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes.
Bioinform., 2012

A toolbox for developing bioinformatics software.
Briefings Bioinform., 2012

2011
REPAIRtoire - a database of DNA repair pathways.
Nucleic Acids Res., 2011

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking.
BMC Bioinform., 2011

ModeRNA server: an online tool for modeling RNA 3D structures.
Bioinform., 2011

RNA tertiary structure prediction with ModeRNA.
Briefings Bioinform., 2011

2010
ModeRNA builds RNA 3D Models from Template Structures.
ERCIM News, 2010

FILTREST3D: discrimination of structural models using restraints from experimental data.
Bioinform., 2010

2009
MODOMICS: a database of RNA modification pathways, update 2008
Nucleic Acids Res., 2009

Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors.
Algorithms, 2009

2008
MetaMQAP: A meta-server for the quality assessment of protein models.
BMC Bioinform., 2008

2007
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
BMC Bioinform., 2007

PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
Bioinform., 2007

I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.
Bioinform., 2007

2006
MODOMICS: a database of RNA modification pathways.
Nucleic Acids Res., 2006

2005
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
BMC Bioinform., 2005

DNase II is a member of the phospholipase D superfamily.
Bioinform., 2005

2004
COLORADO3D, a web server for the visual analysis of protein structures.
Nucleic Acids Res., 2004

Geometric Analysis of Cross-Linkability for Protein Fold Discrimination.
Proceedings of the Biocomputing 2004, 2004

2003
GeneSilico protein structure prediction meta-server.
Nucleic Acids Res., 2003

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure.
Nucleic Acids Res., 2003

Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of <i>S</i>-adenosylmethionine to three crystal structures.
BMC Bioinform., 2003

STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002
RNA: (guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited - bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
BMC Bioinform., 2002

Fold-recognition detects an error in the Protein Data Bank.
Bioinform., 2002

2001
mRNA: guanine-<i>N</i>7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships.
BMC Bioinform., 2001

Structure prediction meta server.
Bioinform., 2001

1999
Comparison of protein structures reveals monophyletic origin of AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation.
Silico Biol., 1999


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