Thomas R. Ioerger
Orcid: 0000-0001-8702-9102
According to our database1,
Thomas R. Ioerger
authored at least 69 papers
between 1993 and 2023.
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Bibliography
2023
Dual ICA to extract interacting sets of genes and conditions from transcriptomic data.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2019
Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression.
BMC Bioinform., 2019
2018
Anion-π Interactions in Computer-Aided Drug Design: Modeling the Inhibition of Malate Synthase by Phenyl-Diketo Acids.
J. Chem. Inf. Model., 2018
A statistical method to identify recombination in bacterial genomes based on SNP incompatibility.
BMC Bioinform., 2018
2017
Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016).
J. Bioinform. Comput. Biol., 2017
A Compatibility Approach to Identify Recombination Breakpoints in Bacterial and Viral Genomes.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes.
J. Bioinform. Comput. Biol., 2016
2015
Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
2013
A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data.
BMC Bioinform., 2013
Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries.
Bioinform., 2013
Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data.
Proceedings of the ACM Conference on Bioinformatics, 2013
2008
Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
2007
Proceedings of the Workshops Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007
Proceedings of the Twentieth International Florida Artificial Intelligence Research Society Conference, 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
IEEE Trans. Knowl. Data Eng., 2006
AI Mag., 2006
Proceedings of the Nineteenth International Florida Artificial Intelligence Research Society Conference, 2006
2005
Determining Relevant Features to Recognize Electron Density Patterns in X-ray Protein Crystallography.
J. Bioinform. Comput. Biol., 2005
IEEE Intell. Syst., 2005
Combining bundle search with buyer coalition formation in electronic markets: A distributed approach through explicit negotiation.
Electron. Commer. Res. Appl., 2005
Proceedings of the IEEE International Conference on Systems, 2005
Forming resource-sharing coalitions: a distributed resource allocation mechanism for self-interested agents in computational grids.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005
On Proactive Helping Behaviors In Teamwork.
Proceedings of the 2005 International Conference on Artificial Intelligence, 2005
Proceedings of the 4th International Joint Conference on Autonomous Agents and Multiagent Systems (AAMAS 2005), 2005
TEXTAL™: Automated Crystallographic Protein Structure Determination.
Proceedings of the Proceedings, 2005
2004
A decision-theoretic approach for designing proactive communication in multi-agent teamwork.
Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), 2004
Efficient retrieval of electron density patterns for modeling proteins by X-ray crystallography.
Proceedings of the 2004 International Conference on Machine Learning and Applications, 2004
An Efficient Heuristic Bundle Search Algorithm for Buyers in Electronic Markets.
Proceedings of the International Conference on Artificial Intelligence, 2004
Task-Oriented Computational Economic-Based Distributed Resource Allocation Mechanisms for Computational Grids.
Proceedings of the International Conference on Artificial Intelligence, 2004
Evaluation of Geometric & Probabilistic Distance Measures To Retrieve Electron Density Patterns for Protein Structure Determination.
Proceedings of the International Conference on Artificial Intelligence, 2004
Proceedings of the Seventeenth International Florida Artificial Intelligence Research Society Conference, 2004
Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
Combining Bundle Search with Buyer Coalition Formation in Electronic Markets: A Distributed Approach through Negotiation.
Proceedings of the 3rd International Joint Conference on Autonomous Agents and Multiagent Systems (AAMAS 2004), 2004
2003
Int. J. Softw. Eng. Knowl. Eng., 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Collaborative Agents for C2 Teamwork Simulation.
Proceedings of the International Conference on Artificial Intelligence, 2003
A Quantitative Model of Capabilities in Multi-Agent Systems.
Proceedings of the International Conference on Artificial Intelligence, 2003
TEXTAL<sup>TM</sup>: Artificial Intelligence Techniques for Automated Protein Structure Determination.
Proceedings of the Fifteenth Conference on Innovative Applications of Artificial Intelligence, 2003
Proceedings of the 2003 ACM CIKM International Conference on Information and Knowledge Management, 2003
2002
Proceedings of the 14th international conference on Software engineering and knowledge engineering, 2002
Proceedings of the 16th International Conference on Pattern Recognition, 2002
Proceedings of the 2002 IEEE International Conference on Data Mining (ICDM 2002), 2002
Proactive Information Exchange During Team Cooperation.
Proceedings of the International Conference on Artificial Intelligence, 2002
Generating Parallel Based on Planning Graph Analysis of Predicate/Transition Nets.
Proceedings of the International Conference on Artificial Intelligence, 2002
Role-Based and Agent-Oriental Teamwork Modeling.
Proceedings of the International Conference on Artificial Intelligence, 2002
Proceedings of the 2002 IEEE International Conference on Fuzzy Systems, 2002
2001
J. Assoc. Inf. Sci. Technol., 2001
Appl. Artif. Intell., 2001
CAST: Collaborative Agents for Simulating Teamwork.
Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence, 2001
Proceedings of the 2001 International Conference on Image Processing, 2001
Proceedings of the Fifth International Conference on Autonomous Agents, 2001
2000
Proceedings of the Intelligent Tutoring Systems, 5th International Conference, 2000
Proceedings of the Fourth International Conference on Autonomous Agents, 2000
Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on on Innovative Applications of Artificial Intelligence, July 30, 2000
1999
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999
Proceedings of the 1999 ACM CIKM International Conference on Information and Knowledge Management, 1999
Proceedings of the Third Annual Conference on Autonomous Agents, 1999
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999
1997
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
Proceedings of the Fourteenth National Conference on Artificial Intelligence and Ninth Innovative Applications of Artificial Intelligence Conference, 1997
1995
Mach. Learn., 1995
1994
Cogn. Sci., 1994
1993
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993