Shankar Subramaniam
Orcid: 0000-0002-8059-4659Affiliations:
- University of California, San Diego, USA
According to our database1,
Shankar Subramaniam
authored at least 58 papers
between 1992 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
IEEE J. Biomed. Health Informatics, 2022
2019
Topological and functional comparison of community detection algorithms in biological networks.
BMC Bioinform., 2019
BMC Bioinform., 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
2017
2016
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.
Nucleic Acids Res., 2016
2015
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways.
BMC Syst. Biol., 2015
Identification of AMP-activated protein kinase targets by a consensus sequence search of the proteome.
BMC Syst. Biol., 2015
2014
IEEE Trans. Biomed. Circuits Syst., 2014
Time-Varying Causal Inference From Phosphoproteomic Measurements in Macrophage Cells.
IEEE Trans. Biomed. Circuits Syst., 2014
Guest Editorial - Special Issue on '-Omics' Based Companion Diagnostics for Personalized Medicine.
IEEE Trans. Biomed. Circuits Syst., 2014
Information theoretic approach to complex biological network reconstruction: application to cytokine release in RAW 264.7 macrophages.
BMC Syst. Biol., 2014
2013
BMC Syst. Biol., 2013
A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism.
Bioinform., 2013
An information-theoretic algorithm to data-driven genetic pathway interaction network reconstruction of dynamic systems.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
J. Cheminformatics, 2012
Genom. Proteom. Bioinform., 2012
2011
Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism.
BMC Syst. Biol., 2011
Community Detection in Biological Networks using a Variational Bayes Approach.
Proceedings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, 2011
2010
Identification of Crosstalk between Phosphoprotein Signaling Pathways in RAW 264.7 Macrophage Cells.
PLoS Comput. Biol., 2010
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010
2009
BMC Syst. Biol., 2009
2008
Proceedings of the ECCB'08 Proceedings, 2008
Peak-Finding Refinement in the Chip-SEQ Experiment.
Proceedings of the ISCA 21st International Conference on Computer Applications in Industry and Engineering, 2008
2007
Neuroinformatics, 2007
Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria.
Genom. Proteom. Bioinform., 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
J. Comput. Biol., 2006
Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation.
BMC Bioinform., 2006
2005
VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.
Nucleic Acids Res., 2005
Bioinform., 2005
Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2005
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes.
Bioinform., 2004
MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.
Bioinform., 2004
The Laboratory Information Management System (LIMS) for Handling the Heterogeneous Data from High Throughput Experiments in the Post-Genome Sequencing Era.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2004
2003
Neuroscience data and tool sharing - A legal and policy framework for neuroinformatics.
Neuroinformatics, 2003
2000
J. Comput. Chem., 2000
1999
Application of combined Monte Carlo and molecular dynamics method to simulation of dipalmitoyl phosphatidylcholine lipid bilayer.
J. Comput. Chem., 1999
1996
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
1995
Mach. Learn., 1995
1994
J. Comput. Chem., 1994
1993
Proceedings of the 1993 ACM/SIGAPP Symposium on Applied Computing: States of the Art and Practice, 1993
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993
1992
Knowledge Engineering for Protein Structure and Motifs: Design of a Prototype System.
Proceedings of the SEKE'92, 1992