Timothy E. Reddy

According to our database, Timothy E. Reddy authored at least 7 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Bayesian estimation of allele-specific expression in the presence of phasing uncertainty.

Xue Zou, Zachary W. Gomez, Timothy E. Reddy, Andrew S. Allen, William H. Majoros

Bioinform., 2025

2021

Causal network inference from gene transcriptional time-series response to glucocorticoids.

Jonathan Lu, Bianca Dumitrascu, Ian C. McDowell, Brian Jo, Alejandro Barrera, Linda K. Hong, Sarah M. Leichter, Timothy E. Reddy, Barbara E. Engelhardt

PLoS Comput. Biol., 2021

2020

Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.

William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen

Bioinform., 2020

2018

Clustering gene expression time series data using an infinite Gaussian process mixture model.

Ian C. McDowell, Dinesh Manandhar, Christopher M. Vockley, Amy K. Schmid, Timothy E. Reddy, Barbara E. Engelhardt

PLoS Comput. Biol., 2018

Predicting gene structure changes resulting from genetic variants via exon definition features.

William H. Majoros, Carson Holt, Michael Campbell, Doreen Ware, Mark Yandell, Timothy E. Reddy

Bioinform., 2018

2017

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.

William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy

Bioinform., 2017

2007

Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites.

Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich

PLoS Comput. Biol., 2007