Charles DeLisi

According to our database¹, Charles DeLisi authored at least 34 papers between 1984 and 2021.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of three.

Timeline

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In proceedings

Article

PhD thesis

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On csauthors.net:

Bibliography

2021

The Mysterious Commonplace - A Life in Science

[BibT_eX]

[DOI]

Charles DeLisi

WorldScientific, ISBN: 9789811238475, 2021

2016

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2016

2013

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.

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[DOI]

Nucleic Acids Res., 2013

2012

Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer.

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[DOI]

PLoS Comput. Biol., 2012

The NIH National Center for Integrative Biomedical Informatics (NCIBI).

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[DOI]

J. Am. Medical Informatics Assoc., 2012

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.

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[DOI]

BMC Bioinform., 2012

Gene set enrichment analysis: performance evaluation and usage guidelines.

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[DOI]

Briefings Bioinform., 2012

2011

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.

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[DOI]

Nucleic Acids Res., 2011

2010

Smoothing Gene Expression Using Biological Networks.

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[DOI]

Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

2009

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2009

2008

High-precision high-coverage functional inference from integrated data sources.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

VisANT: an integrative framework for networks in systems biology.

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[DOI]

Zhenjun Hu

Evan S. Snitkin

Charles DeLisi

Briefings Bioinform., 2008

Ensemble Machine Methods for DNA Binding.

[BibT_eX]

[DOI]

Yue Fan

Mark A. Kon

Charles DeLisi

Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

2007

Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites.

[BibT_eX]

[DOI]

Timothy E. Reddy

Charles DeLisi

Boris E. Shakhnovich

PLoS Comput. Biol., 2007

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2007

Portraits of breast cancer progression.

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[DOI]

BMC Bioinform., 2007

Learning Methods for DNA Binding in Computational Biology.

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[DOI]

Proceedings of the International Joint Conference on Neural Networks, 2007

SVMotif: A Machine Learning Motif Algorithm.

[BibT_eX]

[DOI]

Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

2006

Machine learning methods for transcription data integration.

[BibT_eX]

[DOI]

Dustin T. Holloway

Mark A. Kon

Charles DeLisi

IBM J. Res. Dev., 2006

Gene annotation and network inference by phylogenetic profiling.

[BibT_eX]

[DOI]

Jie Wu

Zhenjun Hu

Charles DeLisi

BMC Bioinform., 2006

Comparative assessment of performance and genome dependence among phylogenetic profiling methods.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

An equilibrium partitioning model connecting gene expression and <i>cis</i>-motif content.

[BibT_eX]

[DOI]

Joe Mellor

Charles DeLisi

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

VisANT: data-integrating visual framework for biological networks and modules.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

Discovery and Annotation of Genetic Modules.

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[DOI]

Charles DeLisi

Proceedings of the Research in Computational Molecular Biology, 2005

2004

VisANT: an online visualization and analysis tool for biological interaction data.

[BibT_eX]

[DOI]

BMC Bioinform., 2004

2003

ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations.

[BibT_eX]

[DOI]

Eugene I. Shakhnovich

BMC Bioinform., 2003

Identification of functional links between genes using phylogenetic profiles.

[BibT_eX]

[DOI]

Jie Wu

Simon Kasif

Charles DeLisi

Bioinform., 2003

2002

Predictome: a database of putative functional links between proteins.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2002

Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae.

[BibT_eX]

[DOI]

Rhonda Harrison

Charles DeLisi

Bioinform., 2002

A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c..

[BibT_eX]

[DOI]

Rhonda Harrison

Charles DeLisi

Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

1999

Computational problems in cell biology.

[BibT_eX]

[DOI]

Charles DeLisi

Sandor Vajda

Comput. Sci. Eng., 1999

1996

Peptide docking using dynamic programming.

[BibT_eX]

[DOI]

Kamalakar Gulukota

Sandor Vajda

Charles DeLisi

J. Comput. Chem., 1996

1993

Loop closure via bond scaling and relaxation.

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[DOI]

J. Comput. Chem., 1993

1984

Computer analysis and structure prediction of nucleic acids and proteins.

[BibT_eX]

[DOI]

Nucleic Acids Res., 1984

Charles DeLisi

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