Charles DeLisi

According to our database1, Charles DeLisi authored at least 34 papers between 1984 and 2021.

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Bibliography

2021
The Mysterious Commonplace - A Life in Science
WorldScientific, ISBN: 9789811238475, 2021

2016
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.
PLoS Comput. Biol., 2016

2013
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.
Nucleic Acids Res., 2013

2012
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer.
PLoS Comput. Biol., 2012

The NIH National Center for Integrative Biomedical Informatics (NCIBI).
J. Am. Medical Informatics Assoc., 2012

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.
BMC Bioinform., 2012

Gene set enrichment analysis: performance evaluation and usage guidelines.
Briefings Bioinform., 2012

2011
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Nucleic Acids Res., 2011

2010
Smoothing Gene Expression Using Biological Networks.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

2009
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.
Nucleic Acids Res., 2009

2008
High-precision high-coverage functional inference from integrated data sources.
BMC Bioinform., 2008

VisANT: an integrative framework for networks in systems biology.
Briefings Bioinform., 2008

Ensemble Machine Methods for DNA Binding.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

2007
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites.
PLoS Comput. Biol., 2007

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Res., 2007

Portraits of breast cancer progression.
BMC Bioinform., 2007

Learning Methods for DNA Binding in Computational Biology.
Proceedings of the International Joint Conference on Neural Networks, 2007

SVMotif: A Machine Learning Motif Algorithm.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

2006
Machine learning methods for transcription data integration.
IBM J. Res. Dev., 2006

Gene annotation and network inference by phylogenetic profiling.
BMC Bioinform., 2006

Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
BMC Bioinform., 2006

An equilibrium partitioning model connecting gene expression and <i>cis</i>-motif content.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
VisANT: data-integrating visual framework for biological networks and modules.
Nucleic Acids Res., 2005

Discovery and Annotation of Genetic Modules.
Proceedings of the Research in Computational Molecular Biology, 2005

2004
VisANT: an online visualization and analysis tool for biological interaction data.
BMC Bioinform., 2004

2003
ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations.
BMC Bioinform., 2003

Identification of functional links between genes using phylogenetic profiles.
Bioinform., 2003

2002
Predictome: a database of putative functional links between proteins.
Nucleic Acids Res., 2002

Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae.
Bioinform., 2002

A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c..
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

1999
Computational problems in cell biology.
Comput. Sci. Eng., 1999

1996
Peptide docking using dynamic programming.
J. Comput. Chem., 1996

1993
Loop closure via bond scaling and relaxation.
J. Comput. Chem., 1993

1984
Computer analysis and structure prediction of nucleic acids and proteins.
Nucleic Acids Res., 1984


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