Tomás Racek

According to our database, Tomás Racek authored at least 13 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Analysis of cyclohexane, cyclopentane, and benzene conformations in ligands for PDB X-ray structures using the Hill-Reilly approach.

Gabriela Buceková, Viktoriia Doshchenko, Tomás Svoboda, Jana Porubská, Aliaksei Chareshneu, Tomás Racek, Vladimír Horský, Radka Svobodová Vareková, Ondrej Schindler

J. Cheminformatics, December, 2026

2025

Gromacs MetaDump: a tool for extracting GROMACS simulation metadata.

Adrián Rosinec, Terézia Slanináková, Tomás Pavlík, Róbert Randiak, Tomás Svoboda, Tomás Racek, Gabriela Buceková, Ondrej Schindler, Matej Antol, Ales Krenek, Karel Berka, Radka Svobodová Vareková

J. Cheminformatics, December, 2025

MOLEonline: a web-based tool for analysing channels, tunnels, and pores (2025 update).

Tomás Racek, Dusan Vel'ký, Gabriela Buceková, Ondrej Schindler, Ivana Hutarová Vareková, Anna Spacková, Václav Bazgier, Karel Berka, Radka Svobodová Vareková

Bioinform., 2025

2023

αCharges: partial atomic charges for AlphaFold structures in high quality.

Ondrej Schindler, Karel Berka, Alessio Cantara, Ales Krenek, Dominik Tichý, Tomás Racek, Radka Svobodová Vareková

Nucleic Acids Res., July, 2023

Onedata4Sci: Life science data management solution based on Onedata.

Tomás Svoboda, Tomás Racek, Josef Handl, Jozef Sabo, Adrián Rosinec, Lukasz Opiola, Wojciech Jesionek, Milan Esner, Markéta Pernisová, Natallia Madzia Valasevich, Ales Krenek, Radka Svobodová Vareková

CoRR, 2023

2021

Correction to: Optimized SQE atomic charges for peptides accessible via a web application.

Ondrej Schindler, Tomás Racek, Aleksandra Marsavelski, Jaroslav Koca, Karel Berka, Radka Svobodová Vareková

J. Cheminformatics, 2021

Optimized SQE atomic charges for peptides accessible via a web application.

Ondrej Schindler, Tomás Racek, Aleksandra Marsavelski, Jaroslav Koca, Karel Berka, Radka Svobodová Vareková

J. Cheminformatics, 2021

Similarity Search for an Extreme Application: Experience and Implementation.

Vladimir Mic, Tomás Racek, Ales Krenek, Pavel Zezula

Proceedings of the Similarity Search and Applications - 14th International Conference, 2021

2020

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges.

Tomás Racek, Ondrej Schindler, Dominik Tousek, Vladimír Horský, Karel Berka, Jaroslav Koca, Radka Svobodová Vareková

Nucleic Acids Res., 2020

Community curation of bioinformatics software and data resources.

Jon C. Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets, Tomás Racek, Anna-Lena Lamprecht, Magnus Palmblad, Matús Kalas, Piotr Chmura, John M. Hancock, Veit Schwämmle, Hans-Ioan Ienasescu

Briefings Bioinform., 2020

2016

NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.

Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca

J. Cheminformatics, 2016

2015

High-quality and universal empirical atomic charges for chemoinformatics applications.

Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca

J. Cheminformatics, 2015

2014

Empirical charges for chemoinformatics applications.

Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca

J. Cheminformatics, 2014