Tomi Suomi

According to our database, Tomi Suomi authored at least 12 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Clarifying the scope and capabilities of ROTS in differential expression analysis.

Tomi Suomi, Jalmari Kettunen, Taneli Pusa, Laura L. Elo

Bioinform., 2026

REACTOR: REgulon Activity analysis and Comparison Tool for single-cell transcriptOmics Research.

Markus Lindén, Sebastian I Zúñiga Norman, Tommi Välikangas, Sini Junttila, Tomi Suomi, Kalle T. Rytkönen, Laura L. Elo

Bioinform., 2026

2025

Adaptive sequence alignment for metagenomic data analysis.

Sami Pietilä, Tomi Suomi, Niklas Paulin, Asta Laiho, Yannes S. Sclivagnotis, Laura L. Elo

Comput. Biol. Medicine, 2025

A Mosaic of Perspectives: Understanding Ownership in Software Engineering.

Tomi Suomi, Petri Ihantola, Tommi Mikkonen, Niko Mäkitalo

Proceedings of the Agile Processes in Software Engineering and Extreme Programming, 2025

2024

ECCB2024: The 23rd European Conference on Computational Biology.

Anu Kukkonen-Macchi, Sampsa Hautaniemi, Katharina F. Heil, Merja Heinäniemi, Lars Juhl Jensen, Sini Junttila, Lukas Käll, Asta Laiho, Peter Maccallum, Matti Nykter, Bengt Persson, Tomi Suomi, Tim Van Den Bossche, Tommi H. Nyrönen, Laura L. Elo

Bioinform., 2024

2022

Correction to: PhosPiR: an automated phosphoproteomic pipeline in R.

Ye Hong, Dani Flinkman, Tomi Suomi, Sami Pietilä, Peter James, Eleanor Coffey, Laura L. Elo

Briefings Bioinform., 2022

PhosPiR: an automated phosphoproteomic pipeline in R.

Ye Hong, Dani Flinkman, Tomi Suomi, Sami Pietilä, Peter James, Eleanor Coffey, Laura L. Elo

Briefings Bioinform., 2022

2018

SimPhospho: a software tool enabling confident phosphosite assignment.

Veronika Suni, Tomi Suomi, Tomoya Tsubosaka, Susumu Y. Imanishi, Laura L. Elo, Garry L. Corthals

Bioinform., 2018

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics.

Sohrab Saraei, Tomi Suomi, Otto Kauko, Laura L. Elo

Bioinform., 2018

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation.

Tommi Välikangas, Tomi Suomi, Laura L. Elo

Briefings Bioinform., 2018

A systematic evaluation of normalization methods in quantitative label-free proteomics.

Tommi Välikangas, Tomi Suomi, Laura L. Elo

Briefings Bioinform., 2018

2017

ROTS: An R package for reproducibility-optimized statistical testing.

Tomi Suomi, Fatemeh Seyednasrollah, Maria K. Jaakkola, Thomas Faux, Laura L. Elo

PLoS Comput. Biol., 2017