Sampsa Hautaniemi

According to our database1, Sampsa Hautaniemi authored at least 30 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 





Anduril 2: upgraded large-scale data integration framework.
Bioinform., 2019

PerPAS: Topology-Based Single Sample Pathway Analysis Method.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Dynamic visualization of multi-level molecular data: The Director package in R.
Comput. Methods Programs Biomed., 2018

Identifying differentially methylated sites in samples with varying tumor purity.
Bioinform., 2018

Data integration to prioritize drugs using genomics and curated data.
BioData Min., 2016

SePIA: RNA and small RNA sequence processing, integration, and analysis.
BioData Min., 2016

Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.
Briefings Bioinform., 2015

Genomic Region Operation Kit for Flexible Processing of Deep Sequencing Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2013

Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links ATAD3B to Poor Survival in Breast Cancer.
PLoS Computational Biology, 2013

Identification of genetic markers with synergistic survival effect in cancer.
BMC Syst. Biol., 2013

High-performance computing in biomedicine.
Proceedings of the International Conference on High Performance Computing & Simulation, 2013

PINA v2.0: mining interactome modules.
Nucleic Acids Res., 2012

CNAmet: an R package for integrating copy number, methylation and expression data.
Bioinform., 2011

Integrative platform to translate gene sets to networks.
Bioinform., 2010

Advanced analysis and visualization of gene copy number and expression data.
BMC Bioinform., 2009

Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations.
BMC Bioinform., 2009

Bioinformatics of gene expression and copy number data integration.
Proceedings of the Statistics and Informatics in Molecular Cancer Research., 2009

Fast Gene Ontology based clustering for microarray experiments.
BioData Min., 2008

Decision tree modeling predicts effects of inhibiting contractility signaling on cell motility.
BMC Syst. Biol., 2007

Computational identification of candidate loci for recessively inherited mutation using high-throughput SNP arrays.
Bioinform., 2007

Jointly Analyzing Gene Expression and Copy Number Data in Breast Cancer Using Data Reduction Models.
IEEE/ACM Trans. Comput. Biology Bioinform., 2006

Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks.
Signal Process., 2006

Modeling of signal-response cascades using decision tree analysis.
Bioinform., 2005

A strategy for identifying putative causes of gene expression variation in human cancers.
J. Frankl. Inst., 2004

Optimized LOWESS normalization parameter selection for DNA microarray data.
BMC Bioinform., 2004

Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.
Mach. Learn., 2003

A novel strategy for microarray quality control using Bayesian networks.
Bioinform., 2003

CGH-Plotter: MATLAB toolbox for CGH-data analysis.
Bioinform., 2003

Identifying underlying factors in breast cancer using independent component analysis.
Proceedings of the NNSP 2003, 2003