Ugo Bastolla

According to our database, Ugo Bastolla authored at least 15 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score.

Ugo Bastolla, David Abia, Oscar Piette

Bioinform., October, 2023

Predicting protein stability changes upon mutation using a simple orientational potential.

Iván Martín Hernández, Yves Dehouck, Ugo Bastolla, José Ramón López-Blanco, Pablo Chacón

Bioinform., January, 2023

2022

Local Normal Mode Analysis for Fast Loop Conformational Sampling.

José Ramón López-Blanco, Yves Dehouck, Ugo Bastolla, Pablo Chacón

J. Chem. Inf. Model., 2022

2019

Can Conformational Changes of Proteins Be Represented in Torsion Angle Space? A Study with Rescaled Ridge Regression.

Ugo Bastolla, Yves Dehouck

J. Chem. Inf. Model., 2019

Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery.

Alvaro Alfayate, Carlos Rodriguez Caceres, Helena G. Dos Santos, Ugo Bastolla

Bioinform., 2019

2016

Learning protein folding and evolution with a snake puzzle.

Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García

PeerJ Prepr., 2016

Learning structural bioinformatics and evolution with a snake puzzle.

Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García

PeerJ Comput. Sci., 2016

2013

Protein evolution along phylogenetic histories under structurally constrained substitution models.

Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla

Bioinform., 2013

2010

Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations.

Raul Mendez, Miriam Fritsche, Markus Porto, Ugo Bastolla

PLoS Comput. Biol., 2010

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH.

Florian Teichert, Jonas Minning, Ugo Bastolla, Markus Porto

BMC Bioinform., 2010

2009

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures.

Alberto Pascual-García, David Abia, Angel R. Ortiz, Ugo Bastolla

PLoS Comput. Biol., 2009

2008

Protein Structure Alignment through a Contact Topology Profile using SABERTOOTH.

Florian Teichert, Ugo Bastolla, Markus Porto

Proceedings of the German Conference on Bioinformatics, 2008

2007

SABERTOOTH: protein structural alignment based on a vectorial structure representation.

Florian Teichert, Ugo Bastolla, Markus Porto

BMC Bioinform., 2007

2005

A Framework for Protein Structure Prediction on the Grid.

Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente

New Gener. Comput., 2005

2004

Computational Proteomics on the Grid.

Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente

New Gener. Comput., 2004