David Posada

According to our database, David Posada authored at least 27 papers between 1998 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data.

Davide Maspero, Fabrizio Angaroni, Lucrezia Patruno, Daniele Ramazzotti, David Posada, Alex Graudenzi

Proceedings of the Artificial Life and Evolutionary Computation - 16th Italian Workshop, 2022

2018

NGSphy: phylogenomic simulation of next-generation sequencing data.

Merly Escalona, Sara Rocha, David Posada

Bioinform., 2018

RecPhyloXML: a format for reconciled gene trees.

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin

Bioinform., 2018

2016

Adapting Reproducible Research Capabilities to Resilient Distributed Calculations.

Manuel Aurelio Rodriguez Pascual, Christos Kanellopoulos, Antonio J. Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada, Rafael Mayo-García

Int. J. Grid High Perform. Comput., 2016

2014

High-performance computing selection of models of DNA substitution for multicore clusters.

Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada

Int. J. High Perform. Comput. Appl., 2014

<i>jmodeltest</i>.org: selection of nucleotide substitution models on the cloud.

Jose Manuel Santorum, Diego Darriba, Guillermo L. Taboada, David Posada

Bioinform., 2014

2013

Protein evolution along phylogenetic histories under structurally constrained substitution models.

Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla

Bioinform., 2013

2011

ProtTest 3: fast selection of best-fit models of protein evolution.

Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada

Bioinform., 2011

HPC selection of models of DNA substitution.

Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada

Proceedings of the Computational Methods in Systems Biology, 9th International Conference, 2011

2010

ALTER: program-oriented conversion of DNA and protein alignments.

Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada

Nucleic Acids Res., 2010

Characterization of phylogenetic networks with NetTest.

Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente

BMC Bioinform., 2010

RDP3: a flexible and fast computer program for analyzing recombination.

Darren P. Martin, Philippe Lemey, Martin Lott, Vincent Moulton, David Posada, Pierre Lefeuvre

Bioinform., 2010

Accurate Selection of Models of Protein Evolution.

Mateus Patricio, Federico Abascal, Rafael Zardoya, David Posada

Proceedings of the Advances in Bioinformatics, 2010

Grid selection of models of nucleotide substitution.

Marta Loureiro, Miguel Pan, Manuel Aurelio Rodriguez Pascual, David Posada, Rafael Mayo

Proceedings of the Healthgrid Applications and Core Technologies, 2010

ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution.

Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada

Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

2009

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.

Sergei L. Kosakovsky Pond, David Posada, Eric W. Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost

PLoS Comput. Biol., 2009

Automatic Prediction of the Genetic Code.

Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya, David Posada

Proceedings of the Distributed Computing, 2009

2007

Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography.

Miguel Arenas, David Posada

BMC Bioinform., 2007

2006

ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online.

David Posada

Nucleic Acids Res., 2006

GenDecoder: genetic code prediction for metazoan mitochondria.

Federico Abascal, Rafael Zardoya, David Posada

Nucleic Acids Res., 2006

GARD: a genetic algorithm for recombination detection.

Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost

Bioinform., 2006

2005

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.

David Posada, Taylor J. Maxwell, Alan R. Templeton

Bioinform., 2005

RDP2: recombination detection and analysis from sequence alignments.

Darren P. Martin, Carolyn Williamson, David Posada

Bioinform., 2005

ProtTest: selection of best-fit models of protein evolution.

Federico Abascal, Rafael Zardoya, David Posada

Bioinform., 2005

2003

Simulating haplotype blocks in the human genome.

David Posada, Carsten Wiuf

Bioinform., 2003

2002

TCS: Estimating Gene Genealogies.

Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall

Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

1998

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall

Bioinform., 1998