Wayne B. Hayes
According to our database1, Wayne B. Hayes authored at least 18 papers between 2003 and 2020.
Legend:Book In proceedings Article PhD thesis Other
An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner.
Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020
SL-GLAlign: improving local alignment of biological networks through simulated annealing.
BLANT - fast graphlet sampling tool.
Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks.
Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019
SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments.
Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8.
SANA: simulated annealing far outperforms many other search algorithms for biological network alignment.
A BMP-FGF Morphogen Toggle Switch Drives the Ultrasensitive Expression of Multiple Genes in the Developing Forebrain.
PLoS Computational Biology, 2014
Graphlet-based measures are suitable for biological network comparison.
Automated quantitative description of spiral galaxy arm-segment structure.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012
Tinkerbell Is Chaotic.
SIAM J. Applied Dynamical Systems, 2011
GraphCruch 2: Software tool for network modeling, alignment and clustering.
BMC Bioinform., 2011
Algorithm 908: Online Exact Summation of Floating-Point Streams.
ACM Trans. Math. Softw., 2010
Geometric Evolutionary Dynamics of Protein Interaction Networks.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Correct Rounding and a Hybrid Approach to Exact Floating-Point Summation.
SIAM J. Scientific Computing, 2009
Robust and reliable defect control for Runge-Kutta methods.
ACM Trans. Math. Softw., 2007
A Fast Shadowing Algorithm for High-Dimensional ODE Systems.
SIAM J. Scientific Computing, 2007
Rigorous Shadowing of Numerical Solutions of Ordinary Differential Equations by Containment.
SIAM J. Numer. Anal., 2003