Mario Cannataro

Orcid: 0000-0003-1502-2387

Affiliations:
  • Magna Græcia University of Catanzaro, Department of Medical and Surgical Sciences, Italy
  • National Research Council, Italy
  • University of Calabria, Rende, Italy


According to our database1, Mario Cannataro authored at least 274 papers between 1991 and 2024.

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Bibliography

2024
Efficient GPU Processing Method to Analyze Large GWAS Data Sets.
Proceedings of the 32nd Euromicro International Conference on Parallel, 2024

2023
MultiGlobAl: Global alignment of multilayer networks.
SoftwareX, December, 2023

Advances and challenges in Bioinformatics and Biomedical Engineering: IWBBIO 2020.
BMC Bioinform., December, 2023

Multilayer network alignment based on topological assessment via embeddings.
BMC Bioinform., December, 2023

Identifying Candidate Gene-Disease Associations via Graph Neural Networks.
Entropy, June, 2023

A Method Based on Temporal Embedding for the Pairwise Alignment of Dynamic Networks.
Entropy, April, 2023

Network models in bioinformatics: modeling and analysis for complex diseases.
Briefings Bioinform., March, 2023

An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS.
PLoS Comput. Biol., February, 2023

Temporal networks in biology and medicine: a survey on models, algorithms, and tools.
Netw. Model. Anal. Health Informatics Bioinform., 2023

MuLaN: a MultiLayer Networks Alignment Algorithm.
CoRR, 2023

Massive Parallel Alignment of RNA-seq Reads in Serverless Computing.
Big Data Cogn. Comput., 2023

An Overview on the Challenges and Limitations Using Cloud Computing in Healthcare Corporations.
Big Data Cogn. Comput., 2023

Distributed ICT solutions for scoliosis management.
Proceedings of the 31st Euromicro International Conference on Parallel, 2023

High performance deep learning libraries for biomedical applications.
Proceedings of the 31st Euromicro International Conference on Parallel, 2023

Using Edge-based Deep Learning Model for Early Detection of Cancer.
Proceedings of the 31st Euromicro International Conference on Parallel, 2023

Investigating the Sentiment in Italian Long-COVID Narrations.
Proceedings of the Computational Science - ICCS 2023, 2023

A method for modelling and executing customized pipelines in serverless computing.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Explanation of machine learning models for predicting obesity level using Shapley values.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Use Predictive Learning Model to Tackle Data Breaches in Healthcare Domain.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Parallel Network Analysis and Communities Detection (PANC) Pipeline for the Analysis and Visualization of COVID-19 Data.
Parallel Process. Lett., 2022

Network alignment and motif discovery in dynamic networks.
Netw. Model. Anal. Health Informatics Bioinform., 2022

An Extensive Assessment of Network Embedding in PPI Network Alignment.
Entropy, 2022

Design and Implementation of a New Local Alignment Algorithm for Multilayer Networks.
Entropy, 2022

Forecasting COVID-19 Epidemic Trends by Combining a Neural Network with Rt Estimation.
Entropy, 2022

A statistical network pre-processing method to improve relevance and significance of gene lists in microarray gene expression studies.
BMC Bioinform., 2022

A parallel software pipeline to select relevant genes for pathway enrichment.
Proceedings of the 30th Euromicro International Conference on Parallel, 2022

Resting-State EEG Classification for PNES Diagnosis.
Proceedings of the Computational Science - ICCS 2022, 2022

Machine Learning Approaches in Inflammatory Bowel Disease.
Proceedings of the Computational Science - ICCS 2022, 2022

A Flexible Automated Pipeline Engine for Transcript-Level Quantification from RNA-seq.
Proceedings of the Advances in Conceptual Modeling, 2022

Serverless computing for RNA-Seq data analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Alignment of Dynamic Networks based on Temporal Embeddings.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Edge-based Deep Learning in Medicine: Classification of ECG signals.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

An Italian lexicon-based sentiment analysis approach for medical applications.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

Scoliosis management through apps.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

Scalable deep learning for healthcare: methods and applications.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021
COVID-19 Community Temporal Visualizer: a new methodology for the network-based analysis and visualization of COVID-19 data.
Netw. Model. Anal. Health Informatics Bioinform., 2021

Identifying prognostic markers for multiple myeloma through integration and analysis of MMRF-CoMMpass data.
J. Comput. Sci., 2021

Parallel and distributed association rule mining in life science: A novel parallel algorithm to mine genomics data.
Inf. Sci., 2021

Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data.
BMC Bioinform., 2021

MMRFBiolinks: an R-package for integrating and analyzing MMRF-CoMMpass data.
Briefings Bioinform., 2021

Bioinformatics helping to mitigate the impact of COVID-19 - Editorial.
Briefings Bioinform., 2021

Sentiment Analysis of medical questionnaires to improve adherence to telemonitoring programs (Discussion Paper).
Proceedings of the 29th Italian Symposium on Advanced Database Systems, 2021

A software pipeline for pre-processing and mining EEG signals: application in neurology (Discussion Paper).
Proceedings of the 29th Italian Symposium on Advanced Database Systems, 2021

A novel network-based methodology for analysis of COVID-19 data.
Proceedings of the 29th Italian Symposium on Advanced Database Systems, 2021

snpStorage: a database to store and share experimental SNPs data sets.
Proceedings of the 29th Italian Symposium on Advanced Database Systems, 2021

A Software Pipeline Based on Sentiment Analysis to Analyze Narrative Medicine Texts.
Proceedings of the Computational Science - ICCS 2021, 2021

Characterization of Long COVID using text mining on narrative medicine texts.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Data mining for electroencephalogram signal processing and analysis.
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020
Sentiment analysis for mining texts and social networks data: Methods and tools.
WIREs Data Mining Knowl. Discov., 2020

cPEA: a parallel method to perform pathway enrichment analysis using multiple pathways databases.
Soft Comput., 2020

A Comprehensive Machine-Learning-Based Software Pipeline to Classify EEG Signals: A Case Study on PNES vs. Control Subjects.
Sensors, 2020

SL-GLAlign: improving local alignment of biological networks through simulated annealing.
Netw. Model. Anal. Health Informatics Bioinform., 2020

Sentiment Analysis and Text Mining of Questionnaires to Support Telemonitoring Programs.
Inf., 2020

BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Bioinform., 2020

An efficient and scalable SPARK preprocessing methodology for Genome Wide Association Studies.
Proceedings of the 28th Euromicro International Conference on Parallel, 2020

MMRF-CoMMpass Data Integration and Analysis for Identifying Prognostic Markers.
Proceedings of the Computational Science - ICCS 2020, 2020

A New Parallel Methodology for the Network Analysis of COVID-19 Data.
Proceedings of the Euro-Par 2020: Parallel Processing Workshops, 2020

Using BioPAX-Parser (BiP) to Annotate Lists of Biological Entities with Pathway Data.
Proceedings of the Advances in Conceptual Modeling, 2020

2019
Computing for Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Big Data Analysis in Bioinformatics.
Proceedings of the Encyclopedia of Big Data Technologies., 2019

GLAlign: A Novel Algorithm for Local Network Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Network building and analysis in connectomics studies: a review of algorithms, databases and technologies.
Netw. Model. Anal. Health Informatics Bioinform., 2019

Using multiple network alignment for studying connectomes.
Netw. Model. Anal. Health Informatics Bioinform., 2019

Parallel extraction of association rules from genomics data.
Appl. Math. Comput., 2019

A Parallel Software Platform for Pathway Enrichment.
Proceedings of the Numerical Computations: Theory and Algorithms, 2019

Parallel Learning of Weighted Association Rules in Human Phenotype Ontology.
Proceedings of the Euro-Par 2019: Parallel Processing Workshops, 2019

Learning Weighted Association Rules in Human Phenotype Ontology.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

Emotion Mining: from Unimodal to Multimodal Approaches.
Proceedings of the Brain-Inspired Computing - 4th International Workshop, 2019

Mining Association Rules From Disease Ontology.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Pathway Analysis for SNP microarray data.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Association Rule Mining from large datasets of clinical invoices document.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Towards Local Alignment of Multiple Networks: Multi-GLAlign.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Challenges and Opportunities of Amazon Serverless Lambda Services in Bioinformatics.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

ParBio'19 - 8th Workshop on Parallel and Cloud-based Bioinformatics and Biomedicine.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

A pipeline for mining association rules from large datasets of retailers invoices.
Proceedings of the 2nd International Conference on Applications of Intelligent Systems, 2019

2018
An experimental study of information content measurement of gene ontology terms.
Int. J. Mach. Learn. Cybern., 2018

HetNetAligner: Design and Implementation of an algorithm for heterogeneous network alignment on Apache Spark.
CoRR, 2018

Editorial of the Special Issue of the 10th Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC 2017.
Comput., 2018

DIETOS: A dietary recommender system for chronic diseases monitoring and management.
Comput. Methods Programs Biomed., 2018

VOTA - A Vocal Tract and Training Analysis Tool.
Proceedings of the IEEE International Conference on Healthcare Informatics, 2018

Towards Heterogeneous Network Alignment: Design and Implementation of a Large-Scale Data Processing Framework.
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

Explainable Sentiment Analysis with Applications in Medicine.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Predicting Abandonment in Telehomecare Programs Using Sentiment Analysis: A System Proposal.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Survey of main tools for querying and analyzing TCGA Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

S4S: RESTful Services to Collect, Integrate and Analyze SNPs and Clinical Data on the Web.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HetNetAligner: A Novel Algorithm for Local Alignment of Heterogeneous Biological Networks.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

A Cooperative Vehicle Routing Platform for Logistic Management in Healthcare.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Services4SNPs: A RESTful Platform for Association Rule Mining and Survival Analysis of Genotyping Data.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
GenotypeAnalytics: a RESTFul platform to mine multiple associations between SNPs and drug response in case-control studies.
PeerJ Prepr., 2017

An extensive assessment of network alignment algorithms for comparison of brain connectomes.
BMC Bioinform., 2017

Parallel and Distributed Analysis of Microarray Data.
Proceedings of the Big Data and HPC: Ecosystem and Convergence, TopHPC 2017, 2017

eMiRo: an ontology-based system for clinical data integration and analysis.
Proceedings of the 25th Italian Symposium on Advanced Database Systems, 2017

DIETOS: A Recommender System for Health Profiling and Diet Management in Chronic Diseases.
Proceedings of the 2nd International Workshop on Health Recommender Systems co-located with the 11th International Conference on Recommender Systems (RecSys 2017), 2017

Learning Association Rules for Pharmacogenomic Studies.
Proceedings of the New Frontiers in Mining Complex Patterns - 6th International Workshop, 2017

Parallel and Cloud-Based Analysis of Omics Data: Modelling and Simulation in Medicine.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

High Performance Analysis of Omics Data: Experiences at University Magna Graecia of Catanzaro.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Using Multi Network Alignment for Analysis of Connectomes.
Proceedings of the International Conference on Computational Science, 2017

10<sup>th</sup> Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2017.
Proceedings of the International Conference on Computational Science, 2017

Using Graphs to Relate Patient's Clinical and Geographical Data.
Proceedings of the 14th International Conference on Mobile Systems and Pervasive Computing (MobiSPC 2017) / 12th International Conference on Future Networks and Communications (FNC 2017) / Affiliated Workshops, 2017

Sentiment analysis and affective computing for depression monitoring.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

A software pipeline for multiple microarray data analysis.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

ParBio'17: 6th Workshop on Parallel and Cloud-based Bioinformatics and Biomedicine.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

Using GenotypeAnalytics to Analyze Pharmacogenomic Datasets.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Extracting Cross-Ontology Weighted Association Rules from Gene Ontology Annotations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Methodologies and experimental platforms for generating and analysing microarray and mass spectrometry-based omics data to support P4 medicine.
Briefings Bioinform., 2016

DIETOS: A recommender system for adaptive diet monitoring and personalized food suggestion.
Proceedings of the 12th IEEE International Conference on Wireless and Mobile Computing, 2016

Efficient Data Mining Analysis of Genomics and Clinical Data for Pharmacogenomics Applications.
Proceedings of the Fuzzy Logic and Soft Computing Applications, 2016

Computational challenges for sentiment analysis in life sciences.
Proceedings of the International Conference on High Performance Computing & Simulation, 2016

9<sup>th</sup> Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2016.
Proceedings of the International Conference on Computational Science 2016, 2016

GLAlign: Using global graph alignment to improve local graph alignment.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Using Network Alignment for Analysis of Connectomes: Experiences from a Clinical Dataset.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
Cloud Computing in Healthcare and Biomedicine.
Scalable Comput. Pract. Exp., 2015

Using SSN-Analyzer for analysis of semantic similarity networks.
Netw. Model. Anal. Health Informatics Bioinform., 2015

GoD: An R-package based on ontologies for prioritization of genes with respect to diseases.
J. Comput. Sci., 2015

DMET-Miner: Efficient discovery of association rules from pharmacogenomic data.
J. Biomed. Informatics, 2015

Analysis of miRNA, mRNA, and TF interactions through network-based methods.
EURASIP J. Bioinform. Syst. Biol., 2015

Using GO-WAR for mining cross-ontology weighted association rules.
Comput. Methods Programs Biomed., 2015

Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

Using Social Networks Data for Behavior and Sentiment Analysis.
Proceedings of the Internet and Distributed Computing Systems, 2015

8<sup>th</sup> Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2015.
Proceedings of the International Conference on Computational Science, 2015

ICT Solutions for Health Education Model.
Proceedings of the 28th IEEE International Symposium on Computer-Based Medical Systems, 2015

Sentiment Analysis and Affective Computing: Methods and Applications.
Proceedings of the Brain-Inspired Computing - Second International Workshop, 2015

A Genetic Algorithm for the selection of structural MRI features for classification of Mild Cognitive Impairment and Alzheimer's Disease.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Overall Survival Analyzer: A software tool to analyze genotyping and clinical data enriched with temporal events.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Efficient learning of association rules from human phenotype ontology.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
coreSNP: Parallel Processing of Microarray Data.
IEEE Trans. Computers, 2014

Geoanalysis of Clinical Diagnoses and Biological Analytes Data.
Proceedings of the 22nd Italian Symposium on Advanced Database Systems, 2014

Relating Clinical Diagnosis and Biological Analytes via EMRs Clustering.
Proceedings of the 2014 IEEE International Conference on Healthcare Informatics, 2014

Mining Association Rules from Gene Ontology and Protein Networks: Promises and Challenges.
Proceedings of the International Conference on Computational Science, 2014

Profiling basic health information of tourists: towards a recommendation system for the adaptive delivery of medical certified nutrition contents.
Proceedings of the International Conference on High Performance Computing & Simulation, 2014

GO-WAR: A Tool for Mining Weighted Association Rules from Gene Ontology Annotations.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

EMG-Miner: Automatic Acquisition and Processing of Electromyographic Signals: First Experimentation in a Clinical Context for Gait Disorders Evaluation.
Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

K-Surfer: A KNIME Extension for the Management and Analysis of Human Brain MRI FreeSurfer/FSL Data.
Proceedings of the Brain Informatics and Health - International Conference, 2014

Biases in information content measurement of gene ontology terms.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

DMET-miner: Efficient learning of association rules from genotyping data for personalized medicine.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Improving annotation quality in gene ontology by mining cross-ontology weighted association rules.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

A web-based tool to analyze semantic similarity networks.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

A taxonomy for bioinformatics tools: exploiting semantics, parallelism, and services for analyzing omics data.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Data mining and life sciences applications on the grid.
WIREs Data Mining Knowl. Discov., 2013

Visual Data Mining of Biological Networks: One Size Does Not Fit All.
PLoS Comput. Biol., 2013

Micro-Analyzer: Automatic preprocessing of Affymetrix microarray data.
Comput. Methods Programs Biomed., 2013

Visualization of protein interaction networks: problems and solutions.
BMC Bioinform., 2013

Studying miRNA-mRNA associations by using graphs.
Proceedings of the 21st Italian Symposium on Advanced Database Systems, 2013

Thresholding of Semantic Similarity Networks Using a Spectral Graph-Based Technique.
Proceedings of the New Frontiers in Mining Complex Patterns, 2013

Application of different classification techniques on brain morphological data.
Proceedings of the 26th IEEE International Symposium on Computer-Based Medical Systems, 2013

Using open data in health care and tourism.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Modularity and community detection in Semantic Similarity Networks trough Spectral Based Transformation and Markov Clustering.
Proceedings of the ACM Conference on Bioinformatics, 2013

Modularity and community detection in Semantic Similarity Networks trough Spectral Based Transformation and Markov Clustering.
Proceedings of the ACM Conference on Bioinformatics, 2013

Cloud4SNP: Distributed Analysis of SNP Microarray Data on the Cloud.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Trends in computer-based medical systems.
SIGHIT Rec., 2012

On the choice of centralized vs decentralized systems for EPR in hospitals.
SIGHIT Rec., 2012

Advanced computing solutions for health care and medicine.
J. Comput. Sci., 2012

DMET-Analyzer: automatic analysis of Affymetrix DMET Data.
BMC Bioinform., 2012

Semantic similarity analysis of protein data: assessment with biological features and issues.
Briefings Bioinform., 2012

Health risk assessment of zoonotic infections agents through plant products in areas with high livestock pressure.
Proceedings of the HealthGIS 2012, 2012

HiBB 2012: 3 rd Workshop on High Performance Bioinformatics and Biomedicine.
Proceedings of the Euro-Par 2012: Parallel Processing Workshops, 2012

audioEPR: A specialized electronic patient records for the semi-automatic management of clinical data in audiology.
Proceedings of CBMS 2012, 2012

SySQ: A Web-based system for survey and questionnaire management in medicine.
Proceedings of CBMS 2012, 2012

CytoMCL: A Cytoscape plugin for fast clustering of protein interaction networks.
Proceedings of CBMS 2012, 2012

Knowledge-based compilation of magnetic resonance diagnosis reports in neuroradiology.
Proceedings of CBMS 2012, 2012

Unraveling multiple miRNA-mRNA associations through a graph-based approach.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Automatic summarisation and annotation of microarray data.
Soft Comput., 2011

Biomedical and Bioinformatics Challenges to Computer Science: Bioinformatics, Modeling of Biomedical Systems and Clinical Applications.
Proceedings of the International Conference on Computational Science, 2011

A System for the Analysis of Snore Signals.
Proceedings of the International Conference on Computational Science, 2011

Experiences of using a DSP based device for vocal signal analysis.
Proceedings of the 7th International Workshop on Models and Analysis of Vocal Emissions for Biomedical Applications, 2011

Distributed Management and Analysis of Omics Data.
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011

HiBB 2011: 2 nd Workshop on High Performance Bioinformatics and Biomedicine.
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011

Challenges in microarray data management and analysis.
Proceedings of the 24th IEEE International Symposium on Computer-Based Medical Systems, 2011

VeNet: A framework for the analysis of protein interaction networks through vector space embedding.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Using semantic similarity to detect features in yeast protein complexes.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Experimental evaluation of OntoPIN: an ontology-annotated PPI database.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Biomedical and bioinformatics challenges to computer science.
Proceedings of the International Conference on Computational Science, 2010

Using ontologies for querying and analysing protein-protein interaction data.
Proceedings of the International Conference on Computational Science, 2010

Special section: Biomedical and bioinformatics challenges to computer science.
Future Gener. Comput. Syst., 2010

IMPRECO: Distributed prediction of protein complexes.
Future Gener. Comput. Syst., 2010

Protein-to-protein interactions: Technologies, databases, and algorithms.
ACM Comput. Surv., 2010

mu-CS: An extension of the TM4 platform to manage Affymetrix binary data.
BMC Bioinform., 2010

Geomedica: a web portal for managing and querying clinical and biological data (Demo Paper).
Proceedings of the Eighteenth Italian Symposium on Advanced Database Systems, 2010

Parallel Pre-processing of Affymetrix Microarray Data.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

HiBB 2010: Workshop on High Performance Bioinformatics and Biomedicine.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

Management and Analysis of Protein-to-Protein Interaction Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

Experimental comparison of biclustering algorithms for PPI networks.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Using RDF for managing protein-protein interaction data.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Early detection of voice diseases via a web-based system.
Biomed. Signal Process. Control., 2009

Using ontologies for querying and analysing protein-protein interaction data.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Modeling and Simulation of Blood Vessel Networks on the Grid.
Proceedings of the Fifth International Conference on Semantics, Knowledge and Grid, 2009

Automatic detection of obstructive sleep apnea syndrome based on snore signals.
Proceedings of the Sixth International Workshop on Models and Analysis of Vocal Emissions for Biomedical Applications, 2009

Cartesio: A Software Tool for Pre-implant Stent Analyses.
Proceedings of the Computational Science, 2009

Bioinformatics' Challenges to Computer Science: Bioinformatics Tools and Biomedical Modeling.
Proceedings of the Computational Science, 2009

StiMaRe: A software tool supporting visual stimuli definition and analysis in magnetic resonance.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

Using ontologies for annotating and retrieving protein-protein interactions data.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

GridSnake: A Grid-based implementation of the Snake segmentation algorithm.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

Bioinformatics Web Portals.
Proceedings of the Database Technologies: Concepts, 2009

Bioinformatics Web Portals.
Proceedings of the Selected Readings on Database Technologies and Applications., 2009

2008
SIGMCC: A system for sharing meta patient records in a Peer-to-Peer environment.
Future Gener. Comput. Syst., 2008

Computational proteomics: management and analysis of proteomics data.
Briefings Bioinform., 2008

A web-based system for the collection and analysis of spectra signals for early detection of voice alterations.
Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

A Tool for the Semiautomatic Acquisition of the Morphological Data of Blood Vessel Networks.
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing with Applications, 2008

Scalable biomedical and bioinformatics applications.
Proceedings of the 3rd International ICST Conference on Scalable Information Systems, 2008

Bioinformatics' Challenges to Computer Science.
Proceedings of the Computational Science, 2008

IMPRECO: A Tool for Improving the Prediction of Protein Complexes.
Proceedings of the Computational Science, 2008

A Grid-based Protein Complex Predictor.
Proceedings of the Global Healthgrid: e-Science Meets Biomedical Informatics, 2008

An Extension of the TIGR M4 Suite to Preprocess and Visualize Affymetrix Binary Files.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

myMCL: A Web Portal for Protein Complexes Prediction.
Proceedings of the Twenty-First IEEE International Symposium on Computer-Based Medical Systems, 2008

2007
Models and Technologies for Adaptive Web Portals.
Proceedings of the Encyclopedia of Portal Technologies and Applications (2 Volumes), 2007

Bioinformatics Web Portals.
Proceedings of the Encyclopedia of Portal Technologies and Applications (2 Volumes), 2007

Sharing mass spectrometry data in a grid-based distributed proteomics laboratory.
Inf. Process. Manag., 2007

Using ontologies for preprocessing and mining spectra data on the Grid.
Future Gener. Comput. Syst., 2007

MS-Analyzer: preprocessing and data mining services for proteomics applications on the Grid.
Concurr. Comput. Pract. Exp., 2007

The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments.
BMC Bioinform., 2007

An Interactive Tool for the Management and Visualization of Mass-Spectrometry Proteomics Data.
Proceedings of the Applications of Fuzzy Sets Theory, 2007

Services, Standards, and Technologies for High Performance Computational Proteomics.
Proceedings of the Frontiers of High Performance Computing and Networking ISPA 2007 Workshops, 2007

Semantic extraction and adaptive delivery of multimedia contents for the cultural assets.
Proceedings of the 2nd Workshop on the Use of P2P, 2007

2006
Managing ontologies for Grid computing.
Multiagent Grid Syst., 2006

Next-generation Grids: requirements and knowledge-based services.
Concurr. Comput. Pract. Exp., 2006

A Grid Service for Pattern Extraction from Mass Spectrometry Data.
Proceedings of the 2006 International Conference on Semantics, 2006

Querying XML-based Electronic Patient Records in a Peer-to-peer Environment.
Proceedings of the Fourteenth Italian Symposium on Advanced Database Systems, 2006

A Grid Service Based on Suffix Trees for Pattern Extraction from Mass Spectrometry Proteomics Data.
Proceedings of the Frontiers of High Performance Computing and Networking, 2006

Analysis and Classification of Proteomics Data, a Case Study.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
On the Preprocessing of Mass Spectrometry Proteomics Data.
Proceedings of the Neural Nets, 16th Italian Workshop on Neural Nets, 2005

SpecDB: A Database for Storing and Managing Mass Spectrometry Proteomics Data.
Proceedings of the Fuzzy Logic and Applications, 6th International Workshop, 2005

Distributed Management of Ontologies on the Grid.
Proceedings of the 14th IEEE International Workshops on Enabling Technologies (WETICE 2005), 2005

MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid.
Proceedings of the 2005 International Conference on Semantics, 2005

Algorithms and Databases in Bioinformatics: Towards a Proteomic Ontology.
Proceedings of the International Symposium on Information Technology: Coding and Computing (ITCC 2005), 2005

Using Ontologies in PROTEUS for Modeling Proteomics Data Mining Applications.
Proceedings of the From Grid to Healthgrid, 2005

Preprocessing of Mass Spectrometry Proteomics Data on the Grid.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

A Software Platform for Services Delivery in the Public Administration.
Proceedings of the Advanced Information Systems Engineering, 17th International Conference, 2005

Using Views to Query XML Documents.
Proceedings of the Encyclopedia of Database Technologies and Applications, 2005

2004
Distributed data mining on grids: services, tools, and applications.
IEEE Trans. Syst. Man Cybern. Part B, 2004

PROTEUS: a Bioinformatics Problem Solving Environment on Grids.
Parallel Process. Lett., 2004

Ontology-based Design of Bioinformatics Workflows on PROTEUS.
J. Digit. Inf. Manag., 2004

Semantics and Knowledge Grids: Building the Next-Generation Grid.
IEEE Intell. Syst., 2004

Proteus, a Grid based Problem Solving for Bioinformatics: Architecture and Experiments.
IEEE Intell. Informatics Bull., 2004

Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer.
Proceedings of the Biological and Artificial Intelligence Environments, 2004

Knowledge-Based Services for Next-Generation Grids.
Proceedings of the 13th IEEE International Workshops on Enabling Technologies (WETICE 2004), 2004

Using Ontologies in PROTEUS, a Grid-Based Problem Solving Environment for Bioinformatics.
Proceedings of the Twelfth Italian Symposium on Advanced Database Systems, 2004

Modelling a Protein Structure Comparison Application on the Grid Using PROTEUS.
Proceedings of the Scientific Applications of Grid Computing, First International Workshop, 2004

A General Architecture for Grid-Based PSE Toolkits.
Proceedings of the Applied Parallel Computing, 2004

Using PROTEUS for Modeling Data Mining Analysis of Proteomics Experiments on the Grid.
Proceedings of the On the Move to Meaningful Internet Systems 2004: OTM 2004 Workshops: OTM Confederated International Workshops and Posters, 2004

Integrating Ontology and Workflow in PROTEUS, a Grid-Based Problem Solving Environment for Bioinformatics.
Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC'04), 2004

A Survey of Architectures for Adaptive Hypermedia.
Proceedings of the Web Dynamics - Adapting to Change in Content, Size, Topology and Use, 2004

2003
The knowledge grid.
Commun. ACM, 2003

Proteomic Profiling of Inherited Breast Cancer: Identification of Molecular Targets for Early Detection, Prognosis and Treatment, and Related Bioinformatics Tools.
Proceedings of the Neural Nets, 14th Italian Workshop on Neural Nets, 2003

Evaluating and Enhancing the Use of the GridFTP Protocol for Efficient Data Transfer on the Grid.
Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface,10th European PVM/MPI Users' Group Meeting, Venice, Italy, September 29, 2003

Architecture, Metadata and Ontologies in the Knowledge Grid.
Proceedings of the MMGPS, 2003

Towards the Next-Generation Grid: A Pervasive Environment for Knowledge-Based Computing.
Proceedings of the 2003 International Symposium on Information Technology (ITCC 2003), 2003

2002
Parallel data intensive computing in scientific and commercial applications.
Parallel Comput., 2002

Distributed data mining on the grid.
Future Gener. Comput. Syst., 2002

Modeling Adaptive Hypermedia with an Object-Oriented Approach and XML.
Proceedings of the Second International Workshop on Web Dynamics, 2002

XAHM: an adaptive hypermedia model based on XML.
Proceedings of the 14th international conference on Software engineering and knowledge engineering, 2002

Squeezex: Synthesis and Compression of XML Data.
Proceedings of the 2002 International Symposium on Information Technology (ITCC 2002), 2002

2001
Compressione Semantica con Perdita di Documenti XML.
Proceedings of the Nono Convegno Nazionale Sistemi Evoluti per Basi di Dati, 2001

XAHM: An XML-Based Adaptive Hypermedia Model and Its Implementation.
Proceedings of the Hypermedia: Openness, 2001

Semantic Lossy Compression of XML Data.
Proceedings of the 8th International Workshop on Knowledge Representation meets Databases (KRDB 2001), 2001

A Probabilistic Adaptive Hypermedia System.
Proceedings of the 2001 International Symposium on Information Technology (ITCC 2001), 2001

A Priority-Based Transmission Protocol for Congested Networks Supporting Incremental Computations.
Proceedings of the 2001 International Symposium on Information Technology (ITCC 2001), 2001

Preface to Special Sessions on Web and Hypermedia Systems.
Proceedings of the 2001 International Symposium on Information Technology (ITCC 2001), 2001

A Probabilistic Approach to Model Adaptive Hypermedia Systems.
Proceedings of the First International Workshop on Web Dynamics, 2001

A Component-based Architecture for the Development and Deployment of WAP-Compliant Transactional Services.
Proceedings of the 34th Annual Hawaii International Conference on System Sciences (HICSS-34), 2001

KNOWLEDGE GRID: High Performance Knowledge Discovery on the Grid.
Proceedings of the Grid Computing, 2001

A Multidimensional Approach for Modelling and Supporting Adaptive Hypermedia Systems.
Proceedings of the Electronic Commerce and Web Technologies, 2001

2000
Transmitting Datacubes over Congested Networks.
Proceedings of the 2000 International Symposium on Information Technology (ITCC 2000), 2000

An XML-Based Architecture for Adaptive Web Hypermedia Systems Using a Probabilistic User Model.
Proceedings of the 2000 International Database Engineering and Applications Symposium, 2000

Clusters and Grids for Distributed and Parallel Knowledge Discovery.
Proceedings of the High-Performance Computing and Networking, 8th International Conference, 2000

An Object-Based Architecture for WAP -Compliant Applications.
Proceedings of the 11th International Workshop on Database and Expert Systems Applications (DEXA'00), 2000

1995
A Parallel Cellular Automata Environment on Multicomputers for Computational Science.
Parallel Comput., 1995

Un'esperienza di Gestione di Copie in un Ambiente di Basi di Dati Distribuite ed Eterogenee.
Proceedings of the Atti del Terzo Convegno Nazionale su Sistemi Evoluti per Basi di Dati, 1995

1993
A Dynamic Load Balancing Strategy for Massively Parallel Computers.
Proceedings of the PARLE '93, 1993

1992
A model of efficient asynchronous parallel algorithms on multicomputer systems.
Parallel Comput., 1992

High level communication mechanisms for distributed parallel computers from an adaptive message routing.
Future Gener. Comput. Syst., 1992

Design, implementation and evaluation of a deadlock-free routing algorithm for concurrent computers.
Concurr. Pract. Exp., 1992

Dynamic Process Scheduling in a Parallel Logic Machine.
Proceedings of the Workshop on Concurrent and Parallel Implementations (sessions A and B), 1992

1991
A parallel logic system on a multicomputer architecture.
Future Gener. Comput. Syst., 1991


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