Wouter Boomsma

According to our database, Wouter Boomsma authored at least 18 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Kernel-Matrix Determinant Estimates from stopped Cholesky Decomposition.

Simon Bartels, Wouter Boomsma, Jes Frellsen, Damien Garreau

J. Mach. Learn. Res., 2023

BEND: Benchmarking DNA Language Models on biologically meaningful tasks.

Frederikke Isa Marin, Felix Teufel, Marc Horlacher, Dennis Madsen, Dennis Pultz, Ole Winther, Wouter Boomsma

CoRR, 2023

Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters.

Marloes Arts, Jes Frellsen, Wouter Boomsma

CoRR, 2023

Implicit Variational Inference for High-Dimensional Posteriors.

Anshuk Uppal, Kristoffer Stensbo-Smidt, Wouter Boomsma, Jes Frellsen

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Adaptive Cholesky Gaussian Processes.

Simon Bartels, Kristoffer Stensbo-Smidt, Pablo Moreno-Muñoz, Wouter Boomsma, Jes Frellsen, Søren Hauberg

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2023

2020

What is a meaningful representation of protein sequences?

Nicki Skafte Detlefsen, Søren Hauberg, Wouter Boomsma

CoRR, 2020

2019

(q, p)-Wasserstein GANs: Comparing Ground Metrics for Wasserstein GANs.

Anton Mallasto, Jes Frellsen, Wouter Boomsma, Aasa Feragen

CoRR, 2019

2018

3D Steerable CNNs: Learning Rotationally Equivariant Features in Volumetric Data.

Maurice Weiler, Mario Geiger, Max Welling, Wouter Boomsma, Taco Cohen

Proceedings of the Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, 2018

2017

Spherical convolutions and their application in molecular modelling.

Wouter Boomsma, Jes Frellsen

Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

2015

ENCORE: Software for Quantitative Ensemble Comparison.

Matteo Tiberti, Elena Papaleo, Tone Bengtsen, Wouter Boomsma, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2015

2014

Combining Experiments and Simulations Using the Maximum Entropy Principle.

Wouter Boomsma, Jesper Ferkinghoff-Borg, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2014

2013

PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.

Wouter Boomsma, Jes Frellsen, Tim Harder, Sandro Bottaro, Kristoffer E. Johansson, Pengfei Tian, Kasper Stovgaard, Christian Andreetta, Simon Olsson, Jan B. Valentin, Lubomir D. Antonov, Anders S. Christensen, Mikael Borg, Jan H. Jensen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Thomas Hamelryck

J. Comput. Chem., 2013

2012

Fast large-scale clustering of protein structures using Gauss integrals.

Tim Harder, Mikael Borg, Wouter Boomsma, Peter Røgen, Thomas Hamelryck

Bioinform., 2012

2010

Beyond rotamers: a generative, probabilistic model of side chains in proteins.

Tim Harder, Wouter Boomsma, Martin Paluszewski, Jes Frellsen, Kristoffer E. Johansson, Thomas Hamelryck

BMC Bioinform., 2010

2005

Full cyclic coordinate descent: solving the protein loop closure problem in C<i>alpha</i> space.

Wouter Boomsma, Thomas Hamelryck

BMC Bioinform., 2005

2004

Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators.

René Thomsen, Wouter Boomsma

Proceedings of the Applications of Evolutionary Computing, 2004

A Comparison of Adaptive Operator Scheduling Methods on the Traveling Salesman Problem.

Wouter Boomsma

Proceedings of the Evolutionary Computation in Combinatorial Optimization, 2004

2003

Using adaptive operator scheduling on problem domains with an operator manifold: applications to the travelling salesman problem.

Wouter Boomsma

Proceedings of the IEEE Congress on Evolutionary Computation, 2003