Elena Papaleo

Orcid: 0000-0002-7376-5894

According to our database1, Elena Papaleo authored at least 16 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Bibliography

2024
Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks.
Briefings Bioinform., January, 2024

2023
PDBminer to Find and Annotate Protein Structures for Computational Analysis.
J. Chem. Inf. Model., December, 2023

A workflow to study mechanistic indicators for driver gene prediction with Moonlight.
Briefings Bioinform., September, 2023

PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles.
J. Chem. Inf. Model., July, 2023

2022
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Nucleic Acids Res., 2022

MutateX: an automated pipeline for <i>in silico</i> saturation mutagenesis of protein structures and structural ensembles.
Briefings Bioinform., 2022

2020
CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data.
PLoS Comput. Biol., 2020

DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res., 2020

2019
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.
PLoS Comput. Biol., 2019

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level.
PLoS Comput. Biol., 2019

2015
ENCORE: Software for Quantitative Ensemble Comparison.
PLoS Comput. Biol., 2015

2014
Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops.
PLoS Comput. Biol., 2014

PyInteraph: A Framework for the Analysis of Interaction Networks in Structural Ensembles of Proteins.
J. Chem. Inf. Model., 2014

2012
xPyder: A PyMOL Plugin To Analyze Coupled Residues and Their Networks in Protein Structures.
J. Chem. Inf. Model., 2012

2011
An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes.
PLoS Comput. Biol., 2011

2008
Validation of protein models by a neural network approach.
BMC Bioinform., 2008


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