Xianghong Jasmine Zhou

According to our database, Xianghong Jasmine Zhou authored at least 29 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis.

Ran Hu, Xianghong Jasmine Zhou, Wenyuan Li

J. Comput. Biol., 2022

2019

CMEP: a database for circulating microRNA expression profiling.

Jianrong Li, Chun-Yip Tong, Tsai-Jung Sung, Ting-Yu Kang, Xianghong Jasmine Zhou, Chun-Chi Liu

Bioinform., 2019

2016

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells.

Jianrong Li, Chuan-Hu Sun, Wenyuan Li, Rou-Fang Chao, Chieh-Chen Huang, Xianghong Jasmine Zhou, Chun-Chi Liu

Nucleic Acids Res., 2016

2015

Finding Genetic Overlaps Among Diseases Based on Ranked Gene Lists.

Quan Chen, Xianghong Jasmine Zhou, Fengzhu Sun

J. Comput. Biol., 2015

IIIDB: a database for isoform-isoform interactions and isoform network modules.

Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu

BMC Genom., 2015

Network tuned multiple rank aggregation and applications to gene ranking.

Wenhui Wang, Xianghong Jasmine Zhou, Zhenqiu Liu, Fengzhu Sun

BMC Bioinform., 2015

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data.

Wenyuan Li, Ke Gong, Qingjiao Li, Frank Alber, Xianghong Jasmine Zhou

Bioinform., 2015

2014

DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.

Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou

Nucleic Acids Res., 2014

2012

Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling.

Wenyuan Li, Chao Dai, Chun-Chi Liu, Xianghong Jasmine Zhou

J. Comput. Biol., 2012

Preface: Special Issue.

Ting Chen, Paul Marjoram, Fengzhu Sun, Xianghong Jasmine Zhou

J. Comput. Biol., 2012

Integrating many co-splicing networks to reconstruct splicing regulatory modules.

Chao Dai, Wenyuan Li, Juan Liu, Xianghong Jasmine Zhou

BMC Syst. Biol., 2012

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.

Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou

Bioinform., 2012

2011

Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation.

Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou

PLoS Comput. Biol., 2011

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.

Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou

Bioinform., 2011

2010

Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets.

Wenyuan Li, Min Xu, Xianghong Jasmine Zhou

J. Biomed. Informatics, 2010

An integrative modular approach to systematically predict gene-phenotype associations.

Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou

BMC Bioinform., 2010

2009

Integrative disease classification based on cross-platform microarray data.

Chun-Chi Liu, Jianjun Hu, Mrinal Kalakrishnan, Haiyan Huang, Xianghong Jasmine Zhou

BMC Bioinform., 2009

Identifying Dynamic Network Modules with Temporal and Spatial Constraints.

Ruoming Jin, Scott McCallen, Chun-Chi Liu, Yang Xiang, Eivind Almaas, Xianghong Jasmine Zhou

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Discovering Causal and Temporal Relations in Biomedical Texts.

Rutu Mulkar-Mehta, Jerry R. Hobbs, Chun-Chi Liu, Xianghong Jasmine Zhou

Proceedings of the Learning by Reading and Learning to Read, 2009

2008

An Integrative Network Approach to Map the Transcriptome to the Phenome.

Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Gene Aging Nexus: a web database and data mining platform for microarray data on aging.

Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou

Nucleic Acids Res., 2007

A graph-based approach to systematically reconstruct human transcriptional regulatory modules.

Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Systematic discovery of functional modules and context-specific functional annotation of human genome.

Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer.

Min Xu, Ming-Chih J. Kao, Juan Nunez-Iglesias, Joseph Nevins, Mike West, Xianghong Jasmine Zhou

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

Integrative missing value estimation for microarray data.

Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou

BMC Bioinform., 2006

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.

Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, Xianghong Jasmine Zhou

Bioinform., 2006

2005

Mining closed relational graphs with connectivity constraints.

Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han

Proceedings of the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2005

Mining coherent dense subgraphs across massive biological networks for functional discovery.

Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification.

Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong

J. Comput. Biol., 2004