Fengzhu Sun
Orcid: 0000-0002-8552-043X
According to our database1,
Fengzhu Sun
authored at least 85 papers
between 1995 and 2023.
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Bibliography
2023
Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies.
PLoS Comput. Biol., October, 2023
2022
PLoS Comput. Biol., 2022
A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies.
NeuroImage, 2022
J. Comput. Biol., 2022
J. Comput. Biol., 2022
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression.
J. Comput. Biol., 2022
A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence Analyses.
J. Comput. Biol., 2022
HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
Bioinform., 2022
2021
Bioinform., 2021
KIMI: Knockoff Inference for Motif Identification from molecular sequences with controlled false discovery rate.
Bioinform., 2021
Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
Briefings Bioinform., 2021
2020
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data.
Quant. Biol., 2020
International Workshop on Applications of Probability and Statistics to Biology, July 11-13, 2019.
Quant. Biol., 2020
Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
Briefings Bioinform., 2020
2019
Statistical significance approximation for local similarity analysis of dependent time series data.
BMC Bioinform., December, 2019
NetGO: improving large-scale protein function prediction with massive network information.
Nucleic Acids Res., 2019
Bioinform., 2019
2018
GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank.
Bioinform., 2018
2017
BMC Bioinform., 2017
Improving contig binning of metagenomic data using (d<sub>2</sub><sup>S</sup>) oligonucleotide frequency dissimilarity.
BMC Bioinform., 2017
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
Bioinform., 2017
Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data.
BioData Min., 2017
2016
Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships.
BMC Syst. Biol., 2016
Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
Bioinform., 2016
2015
J. Comput. Biol., 2015
Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.
BMC Bioinform., 2015
BMC Bioinform., 2015
Multilevel regularized regression for simultaneous taxa selection and network construction with metagenomic count data.
Bioinform., 2015
2014
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.
Nucleic Acids Res., 2014
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
Briefings Bioinform., 2014
Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks.
Briefings Bioinform., 2014
2013
Meeting report on RECOMB 2013 (the 17th Annual International Conference on Research in Computational Molecular Biology).
Quant. Biol., 2013
J. Comput. Biol., 2013
J. Comput. Biol., 2013
A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms.
BMC Genom., 2013
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.
Bioinform., 2013
2012
CEDER: Accurate Detection of Differentially Expressed Genes by Combining Significance of Exons Using RNA-Seq.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
J. Comput. Biol., 2012
Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract.
Proceedings of the Research in Computational Molecular Biology, 2012
2011
DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases.
BMC Syst. Biol., 2011
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.
BMC Syst. Biol., 2011
Integrating multiple protein-protein interaction networks to prioritize disease genes: a Bayesian regression approach.
BMC Bioinform., 2011
Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny.
BMC Bioinform., 2011
Inferring Signaling and Gene Regulatory Network from Genetic and Genomic Information.
Proceedings of the Handbook of Statistical Bioinformatics., 2011
2010
J. Comput. Biol., 2010
2009
Bayesian Models and Gibbs Sampling Strategies for Local Graph Alignment and Motif Identification in Stochastic Biological Networks.
Commun. Inf. Syst., 2009
Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.
BMC Bioinform., 2009
2008
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands.
J. Comput. Biol., 2008
The effects of protein interactions, gene essentiality and regulatory regions on expression variation.
BMC Syst. Biol., 2008
2007
Inferring activity changes of transcription factors by binding association with sorted expression profiles.
BMC Bioinform., 2007
CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.
Bioinform., 2007
2006
BMC Bioinform., 2006
Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy.
BMC Bioinform., 2006
Bioinform., 2006
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors.
Bioinform., 2006
MARD: a new method to detect differential gene expression in treatment-control time courses.
Bioinform., 2006
An integrative approach for causal gene identification and gene regulatory pathway inference.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.
Bioinform., 2005
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
Bioinform., 2005
2004
Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression.
J. Comput. Biol., 2004
J. Comput. Biol., 2004
Bioinform., 2004
A Comparison of Different Strategies for Computing Confidence Intervals of the Linkage Disequilibrium Measure.
Proceedings of the Biocomputing 2004, 2004
2003
J. Comput. Biol., 2003
J. Comput. Biol., 2003
Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
Assessment of the reliability of protein-protein interactions and protein function prediction.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
2002
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.
Proceedings of the Computational Methods for SNPs and Haplotype Inference, 2002
Proceedings of the Sixth Annual International Conference on Computational Biology, 2002
2000
J. Comput. Biol., 2000
1999
1998
SIAM J. Appl. Math., 1998
1997
J. Comput. Biol., 1997
1995