Michael S. Waterman

Affiliations:
  • University of Southern California, Los Angeles, USA


According to our database1, Michael S. Waterman authored at least 63 papers between 1979 and 2021.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2021
Levenshtein Distance, Sequence Comparison and Biological Database Search.
IEEE Trans. Inf. Theory, 2021

The Human Genome Project: the Beginning of the Beginning.
Quant. Biol., 2021

Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution.
J. Comput. Biol., 2021

2019
A new statistic for efficient detection of repetitive sequences.
Bioinform., 2019

2018
Generalized correlation measure using count statistics for gene expression data with ordered samples.
Bioinform., 2018

2017
CAFE: aCcelerated Alignment-FrEe sequence analysis.
Nucleic Acids Res., 2017

2014
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.
Nucleic Acids Res., 2014

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
Briefings Bioinform., 2014

2013
A Geometric Interpretation for Local Alignment-Free Sequence Comparison.
J. Comput. Biol., 2013

2012
Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads.
J. Comput. Biol., 2012

2011
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation.
PLoS Comput. Biol., 2011

Sequence Alignment as Hypothesis Testing.
J. Comput. Biol., 2011

2010
The Power of Detecting Enriched Patterns: An HMM Approach.
J. Comput. Biol., 2010

Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics.
J. Comput. Biol., 2010

An integrative modular approach to systematically predict gene-phenotype associations.
BMC Bioinform., 2010

2009
New Generations: Sequencing Machines and Their Computational Challenges.
J. Comput. Sci. Technol., 2009

Alignment-Free Sequence Comparison (I): Statistics and Power.
J. Comput. Biol., 2009

An Integrative Network Approach to Map the Transcriptome to the Phenome.
J. Comput. Biol., 2009

The Seventh Asia Pacific Bioinformatics Conference (APBC2009).
BMC Bioinform., 2009

HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.
Bioinform., 2009

2007
On the Length of the Longest Exact Position Match in a Random Sequence.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Accuracy Assessment of Diploid Consensus Sequences.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Gene Aging Nexus: a web database and data mining platform for microarray data on aging.
Nucleic Acids Res., 2007

A Quantile Method for Sizing Optical Maps.
J. Comput. Biol., 2007

A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Systematic discovery of functional modules and context-specific functional annotation of human genome.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Alignment of Optical Maps.
J. Comput. Biol., 2006

Integrative missing value estimation for microarray data.
BMC Bioinform., 2006

Refinement of optical map assemblies.
Bioinform., 2006

Stan Ulam and Computational Biology.
Proceedings of the Research in Computational Molecular Biology, 2006

Whole Genome Optical Mapping.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

2005
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
Bioinform., 2005

2004
Haplotype Reconstruction from SNP Alignment.
J. Comput. Biol., 2004

2003
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences.
J. Comput. Biol., 2003

Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Eulerian Path Methods for Multiple Sequence Alignment.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
Zinc Finger Gene Clusters and Tandem Gene Duplication.
J. Comput. Biol., 2002

Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.
Proceedings of the Computational Methods for SNPs and Haplotype Inference, 2002

2001
A new approach to fragment assembly in DNA sequencing.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000
Probabilistic and Statistical Properties of Words: An Overview.
J. Comput. Biol., 2000

1998
Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo
J. Comput. Biol., 1998

1997
Selected Papers from RECOMB'97 - Preface.
J. Comput. Biol., 1997

Pooling Strategies for Establishing Physical Genome Maps Using FISH.
J. Comput. Biol., 1997

Chimeric alignment by dynamic programming: algorithm and biological uses.
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

1996
Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization.
J. Comput. Biol., 1996

Alignment Networks and Electrical Networks.
Discret. Appl. Math., 1996

1995
A New Algorithm for DNA Sequence Assembly.
J. Comput. Biol., 1995

Multiple Filtration and Approximate Pattern Matching.
Algorithmica, 1995

Open Combinatorial Problems in Computational Molecular Biology.
Proceedings of the Third Israel Symposium on Theory of Computing and Systems, 1995

Introduction to computational biology - maps, sequences, and genomes: interdisciplinary statistics.
CRC Press, ISBN: 978-0-412-99391-6, 1995

1994
Approximations to Profile Score Distributions.
J. Comput. Biol., 1994

Linear Trees and RNA Secondary Structure.
Discret. Appl. Math., 1994

1993
Sequence Comparison and Statistical Significance in Molecular Biology (Abstract).
Proceedings of the Algorithms - ESA '93, First Annual European Symposium, Bad Honnef, Germany, September 30, 1993

A Fast Filtration Algorithm for the Substring Matching Problem.
Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992
Dynamic programming algorithms for restriction map comparison.
Comput. Appl. Biosci., 1992

Matrix Longest Common Subsequence Problem, Duality and Hibert Bases.
Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

1991
A systolic array processor for biological information signal processing.
Proceedings of the 5th international conference on Supercomputing, 1991

Biological information signal processor.
Proceedings of the Application Specific Array Processors, 1991

1990
On the number of alignments of <i>k</i> sequences.
Graphs Comb., 1990

1984
Algorithms for restriction map comparisons.
Nucleic Acids Res., 1984

On the statistical significance of nucleic acid similarities.
Nucleic Acids Res., 1984

Technical Note - Determining All Optimal and Near-Optimal Solutions when Solving Shortest Path Problems by Dynamic Programming.
Oper. Res., 1984

1979
On some new sequences generalizing the Catalan and Motzkin numbers.
Discret. Math., 1979


  Loading...