Andrey Rzhetsky

According to our database, Andrey Rzhetsky authored at least 55 papers between 1994 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci.

Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky

Nat. Comput. Sci., 2023

The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci.

Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky

Nat. Comput. Sci., 2023

2022

OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics.

Jonathan M. Matthews, Brooke Schuster, Sara Saheb Kashaf, Ping Liu, Rakefet Ben-Yishay, Dana Ishay-Ronen, Evgeny Izumchenko, Le Shen, Christopher R. Weber, Margaret Bielski, Sonia S. Kupfer, Mustafa Bilgic, Andrey Rzhetsky, Savas Tay

PLoS Comput. Biol., November, 2022

Prediction of robust scientific facts from literature.

Alexander V. Belikov, Andrey Rzhetsky, James A. Evans

Nat. Mach. Intell., 2022

2021

Observable variations in human sex ratio at birth.

Yanan Long, Qi Chen, Henrik Larsson, Andrey Rzhetsky

PLoS Comput. Biol., 2021

Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource Areas.

Chao Zhang, Hanxin Zhang, Atif Ali Khan, Ted Kim, Olasubomi Omoleye, Oluwamayomikun Abiona, Amy Lehman, Christopher O. Olopade, Olufunmilayo I. Olopade, Pedro Lopes, Andrey Rzhetsky

CoRR, 2021

Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word.

Chao Zhang, Jaswanth K. Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020

Measurable health effects associated with the daylight saving time shift.

Hanxin Zhang, Torsten Dahlén, Atif Ali Khan, Gustaf Edgren, Andrey Rzhetsky

PLoS Comput. Biol., 2020

Detecting signal from science: The structure of research communities and prior knowledge improves prediction of genetic regulatory experiments.

Alexander V. Belikov, Andrey Rzhetsky, James A. Evans

CoRR, 2020

2019

BioRelEx 1.0: Biological Relation Extraction Benchmark.

Hrant Khachatrian, Lilit Nersisyan, Karen Hambardzumyan, Tigran Galstyan, Anna Hakobyan, Arsen Arakelyan, Andrey Rzhetsky, Aram Galstyan

Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

2018

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

Ji-Sung Kim, Xin Gao, Andrey Rzhetsky

PLoS Comput. Biol., 2018

Centralized "big science" communities more likely generate non-replicable results.

Valentin Danchev, Andrey Rzhetsky, James A. Evans

CoRR, 2018

2017

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

Ji-Sung Kim, Andrey Rzhetsky

CoRR, 2017

2016

The Big Mechanism Program: Changing How Science Is Done.

Andrey Rzhetsky

Proceedings of the Selected Papers of the XVIII International Conference on Data Analytics and Management in Data Intensive Domains (DAMDID/RCDL 2016), 2016

2014

Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability.

Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons

PLoS Comput. Biol., 2014

Quantifying the Impact and Extent of Undocumented Biomedical Synonymy.

David R. Blair, Kanix Wang, Svetlozar Nestorov, James A. Evans, Andrey Rzhetsky

PLoS Comput. Biol., 2014

DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.

Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou

Nucleic Acids Res., 2014

2013

Tradition and Innovation in Scientists' Research Strategies

Jacob G. Foster, Andrey Rzhetsky, James A. Evans

CoRR, 2013

Representation of probabilistic scientific knowledge.

Larisa N. Soldatova, Andrey Rzhetsky, Kurt De Grave, Ross D. King

J. Biomed. Semant., 2013

2012

Global and Local Approach of Part-of-Speech Tagging for Large Corpora.

Shi Yu, Robert Grossman, Andrey Rzhetsky

Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012

2011

Benchmarking Ontologies: Bigger or Better?

Lixia Yao, Anna Divoli, Ilya Mayzus, James A. Evans, Andrey Rzhetsky

PLoS Comput. Biol., 2011

War of Ontology Worlds: Mathematics, Computer Code, or Esperanto?

Andrey Rzhetsky, James A. Evans

PLoS Comput. Biol., 2011

Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis.

Anna Divoli, Eneida A. Mendonça, James A. Evans, Andrey Rzhetsky

PLoS Comput. Biol., 2011

Representation of research hypotheses.

Larisa N. Soldatova, Andrey Rzhetsky

J. Biomed. Semant., 2011

A distributed look-up architecture for text mining applications using mapreduce.

Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky

Proceedings of the 20th ACM International Symposium on High Performance Distributed Computing, 2011

Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches.

Andrey Rzhetsky

Proceedings of the Artificial Intelligence in Medicine, 2011

2010

Discovering and Counting Biomedical Verbs.

Sonjia Waxmonsky, John Goldsmith, Andrey Rzhetsky

Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

2009

How to Get the Most out of Your Curation Effort.

Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur

PLoS Comput. Biol., 2009

Getting Started in Text Mining: Part Two.

Andrey Rzhetsky, Michael R. Seringhaus, Mark B. Gerstein

PLoS Comput. Biol., 2009

Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans.

Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky

PLoS Comput. Biol., 2009

2008

Quantitative systems-level determinants of drug targets.

Lixia Yao, Andrey Rzhetsky

BMC Bioinform., 2008

Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users.

Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur

Bioinform., 2008

2006

Imitating Manual Curation of Text-Mined Facts in Biomedicine.

Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky

PLoS Comput. Biol., 2006

New directions in biomedical text annotation: definitions, guidelines and corpus construction.

W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay

BMC Bioinform., 2006

Mining biomedical texts for disease-related pathways.

Andrey Rzhetsky

Proceedings of the Workshop on Linking Natural Language and Biology, 2006

2005

The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: <i>in silico</i> Biology, Computational Genomics and Evolutionary Biology.

Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman

Bioinform., 2005

2004

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.

Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur

J. Biomed. Informatics, 2004

Probabilistic inference of molecular networks from noisy data sources.

Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky

Bioinform., 2004

2003

Learning to predict protein-protein interactions from protein sequences.

Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky

Bioinform., 2003

2002

Automatically identifying gene/protein terms in MEDLINE abstracts.

Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur

J. Biomed. Informatics, 2002

Two biomedical sublanguages: a description based on the theories of Zellig Harris.

Carol Friedman, Pauline Kra, Andrey Rzhetsky

J. Biomed. Informatics, 2002

Towards the Prediction of Complete Protein-Protein Interaction Networks.

Shawn M. Gomez, Andrey Rzhetsky

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Of truth and pathways: chasing bits of information through myriads of articles.

Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

Automatic extraction of gene and protein synonyms from MEDLINE and journal articles.

Hong Yu, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky, W. John Wilbur

Proceedings of the AMIA 2002, 2002

2001

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

Andrey Rzhetsky, Shawn M. Gomez

Bioinform., 2001

Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins.

Andrey Rzhetsky, Pavel Morozov

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Disambiguating proteins, genes, and RNA in text: a machine learning approach.

Vasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways.

Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

2000

A knowledge model for analysis and simulation of regulatory networks.

Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman

Bioinform., 2000

Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles.

Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman

Proceedings of the AMIA 2000, 2000

1999

Representing genomic knowledge in the UMLS semantic network.

Hong Yu, Carol Friedman, Andrey Rzhetsky, Pauline Kra

Proceedings of the AMIA 1999, 1999

A Knowledge Model for Analysis and Simulation of Regulatory Based on Information in Electronic Publications.

Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Pauline Kra, Carol Friedman

Proceedings of the AMIA 1999, 1999

1996

Fitting models of intron evolution to aldehyde dehydrogenase data.

Andrey Rzhetsky, Francisco José Ayala, Lily C. Hsu, Cheng Chang, Akira Yoshida

Proceedings of the Mathematical Hierarchies and Biology, 1996

1994

METREE: a program package for inferring and testing minimum-evolution trees.

Andrey Rzhetsky, Masatoshi Nei

Comput. Appl. Biosci., 1994