Yimin Fan

According to our database, Yimin Fan authored at least 13 papers between 2020 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Predicting drug responses of unseen cell types through transfer learning with foundation models.

Yixuan Wang, Xinyuan Liu, Yimin Fan, Binghui Xie, James Cheng, Kam Chung Wong, Pak Hang Peter Cheung, Irwin King, Yu Li

Nat. Comput. Sci., January, 2026

DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design.

Yanting Li, Zikang Wang, Jiyue Jiang, Ziqian Lin, Dongchen He, Yuheng Shan, Yanruisheng Shao, Jiayi Li, Xiangyu Shi, Jiuming Wang, Yanyu Chen, Yimin Fan, Han Li, Yu Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025

Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting.

Jiyue Jiang, Pengan Chen, Jiuming Wang, Dongchen He, Ziqin Wei, Liang Hong, Licheng Zong, Sheng Wang, Qinze Yu, Zixian Ma, Yanyu Chen, Yimin Fan, Xiangyu Shi, Jiawei Sun, Chuan Wu, Yu Li

CoRR, March, 2025

Fusion CNN-Transformer Model for Target Counting in Complex Scenarios.

Xingyuan He, Ruiying Wang, Ting Cao, Weiyu Liang, Yimin Fan

Informatica (Slovenia), 2025

cfDecon: Accurate and Interpretable Methylation-Based Cell Type Deconvolution for Cell-Free DNA.

Yixuan Wang, Jiayi Li, Jingqi Li, Shen Yang, Yuhan Huang, Xinyuan Liu, Yimin Fan, Irwin King, Yumei Li, Yu Li

Proceedings of the Research in Computational Molecular Biology, 2025

2024

Progress and opportunities of foundation models in bioinformatics.

Qing Li, Zhihang Hu, Yixuan Wang, Lei Li, Yimin Fan, Irwin King, Gengjie Jia, Sheng Wang, Le Song, Yu Li

Briefings Bioinform., November, 2024

Progress and Opportunities of Foundation Models in Bioinformatics.

Qing Li, Zhihang Hu, Yixuan Wang, Lei Li, Yimin Fan, Irwin King, Le Song, Yu Li

CoRR, 2024

Learning meaningful representation of single-neuron morphology via large-scale pre-training.

Yimin Fan, Yaxuan Li, Yunhua Zhong, Liang Hong, Lei Li, Yu Li

Bioinform., 2024

GFETM: Genome Foundation-Based Embedded Topic Model for scATAC-seq Modeling.

Yimin Fan, Yu Li, Jun Ding, Yue Li

Proceedings of the Research in Computational Molecular Biology, 2024

2023

Evaluating Neuron Interpretation Methods of NLP Models.

Yimin Fan, Fahim Dalvi, Nadir Durrani, Hassan Sajjad

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2021

Discovering Representation Sprachbund For Multilingual Pre-Training.

Yimin Fan, Yaobo Liang, Alexandre Muzio, Hany Hassan, Houqiang Li, Ming Zhou, Nan Duan

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2021, 2021

2020

Iterative learning formation control for continuous-time multi-agent systems with randomly varying trial lengths.

Yang Liu, Yimin Fan, Yingmin Jia

J. Frankl. Inst., 2020

Enhance The Performance Of Navigation: A Two-Stage Machine Learning Approach.

Yimin Fan, Zhiyuan Wang, Yuanpeng Lin, Haisheng Tan

Proceedings of the 6th International Conference on Big Data Computing and Communications, 2020