Yingbo Cui

According to our database, Yingbo Cui authored at least 17 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

SNCL: a supernode OpenCL implementation for hybrid computing arrays.

Tao Tang, Kai Lu, Lin Peng, Yingbo Cui, Jianbin Fang, Chun Huang, Ruibo Wang, Canqun Yang, Yifei Guo

J. Supercomput., May, 2024

2023

Performance Evaluation of Spark, Ray and MPI: A Case Study on Long Read Alignment Algorithm.

Kun Ran, Yingbo Cui, Zihang Wang, Shaoliang Peng

Proceedings of the Algorithms and Architectures for Parallel Processing, 2023

DrugProtKGE: Weakly Supervised Knowledge Graph Embedding for Highly-Effective Drug-Protein Interaction Representation.

Yanlong Qiu, Siqi Wang, Xi Yang, Xinyuan Qiu, Chengkun Wu, Yingbo Cui, Canqun Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

MTMap: A Long-Read Alignment Tool based on Multi-Core DSPs.

Yufei Guo, Xinjie An, Shijie Li, Yingbo Cui, Peng Zhang, Biao Long, Shanshan Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.

Zihang Wang, Yingbo Cui, Shaoliang Peng, Xiangke Liao, Yangbo Yu

Comput. Biol. Chem., 2022

MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing.

Weiming Xiang, Yingbo Cui, Yaning Yang, Ang Zhang, Boya Ji, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

CRISP-view: a database of functional genetic screens spanning multiple phenotypes.

Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu, Yuan Gao, Tyson Dawson, Lumen Chao, Wubing Zhang, Dian Li, Zexiang Zeng, Jijun Yu, Zexu Li, Teng Fei, Shaoliang Peng, Wei Li

Nucleic Acids Res., 2021

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments.

Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang

BMC Bioinform., 2021

Large-Scale Parallel Alignment Algorithm for SMRT Reads.

Zeyu Xia, Yingbo Cui, Ang Zhang, Peng Zhang, Sifan Long, Tao Tang, Lin Peng, Chun Huang, Canqun Yang, Xiangke Liao

Proceedings of the Algorithms and Architectures for Parallel Processing, 2021

H-VAE: A Hybrid Variational AutoEncoder with Data Augmentation in Predicting CRISPR/Cas9 Off-target.

Weiming Xiang, Dong Chen, Yingbo Cui, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2019

A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer.

Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2018

mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection.

Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao

IEEE Trans. Parallel Distributed Syst., 2018

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.

Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi

BMC Bioinform., 2018

2015

Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer.

Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen

Supercomput. Front. Innov., 2015

Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2.

Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu

Proceedings of the High Performance Computing - 30th International Conference, 2015

The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer.

Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014

mBWA: A Massively Parallel Sequence Reads Aligner.

Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014