Shaoliang Peng

According to our database, Shaoliang Peng authored at least 143 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Opportunities and challenges in the application of large artificial intelligence models in radiology.

Liangrui Pan, Zhenyu Zhao, Ying Lu, Kewei Tang, Liyong Fu, Qingchun Liang, Shaoliang Peng

CoRR, 2024

SELECTOR: Heterogeneous graph network with convolutional masked autoencoder for multimodal robust prediction of cancer survival.

Liangrui Pan, Yijun Peng, Yan Li, Xiang Wang, Wenjuan Liu, Liwen Xu, Qingchun Liang, Shaoliang Peng

CoRR, 2024

2023

Feature augmentation and semi-supervised conditional transfer learning for early detection of sepsis.

Yutao Dou, Wei Li, Yucen Nan, Yidi Zhang, Shaoliang Peng

Comput. Biol. Medicine, October, 2023

An Integration Framework of Secure Multiparty Computation and Deep Neural Network for Improving Drug-Drug Interaction Predictions.

Liang Pan, Xia Xiao, Shengyun Liu, Shaoliang Peng

J. Comput. Biol., September, 2023

HF-DDI: Predicting Drug-Drug Interaction Events Based on Multimodal Hybrid Fusion.

An Huang, Xiaolan Xie, Xiaojun Yao, Huanxiang Liu, Xiaoqi Wang, Shaoliang Peng

J. Comput. Biol., September, 2023

DHUnet: Dual-branch hierarchical global-local fusion network for whole slide image segmentation.

Lian Wang, Liangrui Pan, Hetian Wang, Mingting Liu, Zhichao Feng, Pengfei Rong, Zuo Chen, Shaoliang Peng

Biomed. Signal Process. Control., August, 2023

Palm bunch grading technique using a multi-input and multi-label convolutional neural network.

Pronthep Pipitsunthonsan, Liangrui Pan, Shaoliang Peng, Thanate Khaorapapong, Sutkhet Nakasathien, Sittiporn Channumsin, Mitchai Chongcheawchamnan

Comput. Electron. Agric., July, 2023

Multitask joint strategies of self-supervised representation learning on biomedical networks for drug discovery.

Xiaoqi Wang, Yingjie Cheng, Yaning Yang, Yue Yu, Fei Li, Shaoliang Peng

Nat. Mac. Intell., April, 2023

A peer-to-peer file storage and sharing system based on consortium blockchain.

Shaoliang Peng, Wenxuan Bao, Hao Liu, Xia Xiao, Jiandong Shang, Lin Han, Shan Wang, Xiaolan Xie, Yang Xu

Future Gener. Comput. Syst., April, 2023

GADRP: graph convolutional networks and autoencoders for cancer drug response prediction.

Hong Wang, Chong Dai, Yuqi Wen, Xiaoqi Wang, Wenjuan Liu, Song He, Xiaochen Bo, Shaoliang Peng

Briefings Bioinform., January, 2023

ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learning.

Wenwu Zeng, Dafeng Lv, Wenjuan Liu, Shaoliang Peng

CoRR, 2023

PACS: Prediction and analysis of cancer subtypes from multi-omics data based on a multi-head attention mechanism model.

Liangrui Pan, Dazheng Liu, Zhichao Feng, Wenjuan Liu, Shaoliang Peng

CoRR, 2023

CVFC: Attention-Based Cross-View Feature Consistency for Weakly Supervised Semantic Segmentation of Pathology Images.

Liangrui Pan, Lian Wang, Zhichao Feng, Liwen Xu, Shaoliang Peng

CoRR, 2023

LDCSF: Local depth convolution-based Swim framework for classifying multi-label histopathology images.

Liangrui Pan, Yutao Dou, Zhichao Feng, Liwen Xu, Shaoliang Peng

CoRR, 2023

Multi-Head Attention Mechanism Learning for Cancer New Subtypes and Treatment Based on Cancer Multi-Omics Data.

Liangrui Pan, Dazhen Liu, Yutao Dou, Lian Wang, Zhichao Feng, Pengfei Rong, Liwen Xu, Shaoliang Peng

CoRR, 2023

Understanding and Detecting On-The-Fly Configuration Bugs.

Teng Wang, Zhouyang Jia, Shanshan Li, Si Zheng, Yue Yu, Erci Xu, Shaoliang Peng, Xiangke Liao

Proceedings of the 45th IEEE/ACM International Conference on Software Engineering, 2023

One Adapter for All Programming Languages? Adapter Tuning for Code Search and Summarization.

Deze Wang, Boxing Chen, Shanshan Li, Wei Luo, Shaoliang Peng, Wei Dong, Xiangke Liao

Proceedings of the 45th IEEE/ACM International Conference on Software Engineering, 2023

Performance Evaluation of Spark, Ray and MPI: A Case Study on Long Read Alignment Algorithm.

Kun Ran, Yingbo Cui, Zihang Wang, Shaoliang Peng

Proceedings of the Algorithms and Architectures for Parallel Processing, 2023

EMIS: A Uniform Management and Resolution System of Multiple Identifiers on Ethereum.

Feng Zhao, Hui Li, Shaoliang Peng, Xiyu Wang, Ping Lu, Qianbin Chen, Weixiang Huang, Jianping Wu, Xiang Zhu, Selwyn Deng, Hanxu Hou, Jieren Cheng, Han Wang

Proceedings of the IEEE International Conference on Blockchain, 2023

ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learning.

Wenwu Zeng, Dafeng Lv, Xuan Liu, Guo Chen, Wenjuan Liu, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

ImmRegInformer: an interpretable Transformer-based method for prioritizing immune-regulatory cancer drivers.

Liwen Xu, Boya Ji, Yijun Peng, Wending Pi, Xiangxiang Zeng, Peng Zhao, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

RobustHealthFL: Robust Strategy Against Malicious Clients in Non-iid Healthcare Federated Learning.

Peng Xi, Wenjuan Tang, Kun Xie, Xuan Liu, Peng Zhao, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

PACS: Prediction and analysis of cancer subtypes from multi-omics data based on a multi-head attention mechanism model.

Liangrui Pan, Pinle Qin, Pengfei Rong, Xiangxiang Zeng, Dazheng Liu, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

CVFC: Attention-Based Cross-View Feature Consistency for Weakly Supervised Semantic Segmentation of Pathology Images.

Liangrui Pan, Keqin Li, Wenjuan Liu, Liwen Xu, Zhichao Feng, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

LDCSF: Local depth convolution-based Swim framework for classifying multi-label histopathology images.

Liangrui Pan, Guo Chen, Wenjuan Liu, Liwen Xu, Xuan Liu, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

ParaMET: A Parallel Framework for Efficient Medical Data Extraction on Tianhe-NG Supercomputer.

Yutao Dou, Yangtao Zheng, Dazheng Liu, Keqin Li, Sheng Xiao, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

An Attention-based Label Mapping and Multi-factor Domain Adaptation Approach for ACS Prediction.

Yutao Dou, Zhengyu Liu, Xiongjun Zhao, Kun Xie, Guo Chen, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Detecting and Classifying Nuclei Using Multi-Scale Fully Convolutional Network.

Bin Xin, Yaning Yang, Xiaolan Xie, Jiandong Shang, Zhengyu Liu, Shaoliang Peng

J. Comput. Biol., 2022

MGTUNet: An new UNet for colon nuclei instance segmentation and quantification.

Liangrui Pan, Lian Wang, Mingting Liu, Zhujun Xu, Liwen Xu, Shaoliang Peng

CoRR, 2022

A review of machine learning approaches, challenges and prospects for computational tumor pathology.

Liangrui Pan, Zhichao Feng, Shaoliang Peng

CoRR, 2022

Multi-task Joint Strategies of Self-supervised Representation Learning on Biomedical Networks for Drug Discovery.

Xiaoqi Wang, Yingjie Cheng, Yaning Yang, Fei Li, Shaoliang Peng

CoRR, 2022

Clustering-Evolutionary Random Support Vector Machine Ensemble for fMRI-Based Asperger Syndrome Diagnosis.

Xia-an Bi, Hao Wu, Xi Hu, Yu Fu, Shaoliang Peng

Comput. J., 2022

MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.

Zihang Wang, Yingbo Cui, Shaoliang Peng, Xiangke Liao, Yangbo Yu

Comput. Biol. Chem., 2022

Noise-reducing attention cross fusion learning transformer for histological image classification of osteosarcoma.

Liangrui Pan, Hetian Wang, Lian Wang, Boya Ji, Mingting Liu, Mitchai Chongcheawchamnan, Yuan Jin, Shaoliang Peng

Biomed. Signal Process. Control., 2022

D3AI-CoV: a deep learning platform for predicting drug targets and for virtual screening against COVID-19.

Yanqing Yang, Deshan Zhou, Xinben Zhang, Yulong Shi, Jiaxin Han, Liping Zhou, Leyun Wu, Minfei Ma, Jintian Li, Shaoliang Peng, Zhijian Xu, Weiliang Zhu

Briefings Bioinform., 2022

SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants.

Yaning Yang, Xiaoqi Wang, Deshan Zhou, Dong-Qing Wei, Shaoliang Peng

Briefings Bioinform., 2022

Channel pruning guided by global channel relation.

Yingjie Cheng, Xiaoqi Wang, Xiaolan Xie, Wentao Li, Shaoliang Peng

Appl. Intell., 2022

EMRShareChain: A Privacy-Preserving EMR Sharing System Model Based on the Consortium Blockchain.

Xinglong Zhang, Peng Xi, Wenjuan Liu, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 18th International Symposium, 2022

MPCDDI: A Secure Multiparty Computation-Based Deep Learning Framework for Drug-Drug Interaction Predictions.

Xia Xiao, Xiaoqi Wang, Shengyun Liu, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 18th International Symposium, 2022

A Multimodal Data Fusion-Based Deep Learning Approach for Drug-Drug Interaction Prediction.

An Huang, Xiaolan Xie, Xiaoqi Wang, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 18th International Symposium, 2022

UniMed: Multimodal Multitask Learning for Medical Predictions.

Xiongjun Zhao, Xiang Wang, Fenglei Yu, Jiandong Shang, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

ECGNN: Enhancing Abnormal Recognition in 12-Lead ECG with Graph Neural Network.

Xiongjun Zhao, Zhengyu Liu, Lin Han, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing.

Weiming Xiang, Yingbo Cui, Yaning Yang, Ang Zhang, Boya Ji, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

deepDGA: Biomedical Heterogeneous Network-based Deep Learning Framework for Disease-Gene Association Predictions.

Hong Wang, Xiaoqi Wang, Wenjuan Liu, Xiaolan Xie, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

MGTUNet: An new UNet for colon nuclei instance segmentation and quantification.

Liangrui Pan, Lian Wang, Zhichao Feng, Zhujun Xu, Liwen Xu, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

LUNAR : Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network.

Deshan Zhou, Shaoliang Peng, Dong-Qing Wei, Wu Zhong, Yutao Dou, Xiaolan Xie

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Guest Editorial for the 17th Asia Pacific Bioinformatics Conference.

Louxin Zhang, Shaoliang Peng, Yi-Ping Phoebe Chen, David Sankoff, Guoliang Li, Hong-Yu Zhang

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Discriminant Projection Shared Dictionary Learning for Classification of Tumors Using Gene Expression Data.

Shaoliang Peng, Yaning Yang, Wei Liu, Fei Li, Xiangke Liao

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

CRISP-view: a database of functional genetic screens spanning multiple phenotypes.

Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu, Yuan Gao, Tyson Dawson, Lumen Chao, Wubing Zhang, Dian Li, Zexiang Zeng, Jijun Yu, Zexu Li, Teng Fei, Shaoliang Peng, Wei Li

Nucleic Acids Res., 2021

D2D-Enabled Mobile-Edge Computation Offloading for Multiuser IoT Network.

Yuhan Yang, Chengnian Long, Jing Wu, Shaoliang Peng, Bo Li

IEEE Internet Things J., 2021

Performance Improvement of Atmospheric Continuous-Variable Quantum Key Distribution with Untrusted Source.

Qin Liao, Gang Xiao, Shaoliang Peng

Entropy, 2021

Heterogeneous network-based drug repurposing for COVID-19.

Shuting Jin, Xiangxiang Zeng, Wei Huang, Feng Xia, Changzhi Jiang, Xiangrong Liu, Shaoliang Peng

CoRR, 2021

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments.

Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang

BMC Bioinform., 2021

MultiDTI: drug-target interaction prediction based on multi-modal representation learning to bridge the gap between new chemical entities and known heterogeneous network.

Deshan Zhou, Zhijian Xu, Wentao Li, Xiaolan Xie, Shaoliang Peng

Bioinform., 2021

BioERP: biomedical heterogeneous network-based self-supervised representation learning approach for entity relationship predictions.

Xiaoqi Wang, Yaning Yang, Kenli Li, Wentao Li, Fei Li, Shaoliang Peng

Bioinform., 2021

DeepR2cov: deep representation learning on heterogeneous drug networks to discover anti-inflammatory agents for COVID-19.

Xiaoqi Wang, Bin Xin, Weihong Tan, Zhijian Xu, Kenli Li, Fei Li, Wu Zhong, Shaoliang Peng

Briefings Bioinform., 2021

MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph.

Yanyi Chu, Xuhong Wang, Qiuying Dai, Yanjing Wang, Qiankun Wang, Shaoliang Peng, Xiaoyong Wei, Jingfei Qiu, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei

Briefings Bioinform., 2021

CFCN: A Multi-scale Fully Convolutional Network with Dilated Convolution for Nuclei Classification and Localization.

Bin Xin, Yaning Yang, Dongqing Wei, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

MIFS: A Peer-to-Peer Medical Images Storage and Sharing System Based on Consortium Blockchain.

Hao Liu, Xia Xiao, Xinglong Zhang, Kenli Li, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

IDOS: Improved D3DOCK on Spark.

Yonghui Cui, Zhijian Xu, Shaoliang Peng

Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

A Knowledge-aware Machine Reading Comprehension Framework for Dialogue Symptom Diagnosis.

Xiongjun Zhao, Yingjie Cheng, Weiming Xiang, Xiang Wang, Lin Han, Jiandong Shang, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

ParaPindel: a scalable coordinated parallel detection framework for human genome-wide structural variation.

Yaning Yang, Xiaoqi Wang, Ying Xu, Chao Yang, Bin Jiang, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

H-VAE: A Hybrid Variational AutoEncoder with Data Augmentation in Predicting CRISPR/Cas9 Off-target.

Weiming Xiang, Dong Chen, Yingbo Cui, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

FEDI: Few-shot learning based on Earth Mover's Distance algorithm combined with deep residual network to identify diabetic retinopathy.

Liangrui Pan, Peng Zhang, Fei Xia, Boya Ji, Wenjuan Liu, Hetian Wang, Yuan Jin, Mitchai Chongcheawchamnan, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

LADstackING: Stacking Ensemble Learning-based Computational Model for Predicting Potential LncRNA-disease Associations.

Jiechen Li, Xiangxiang Zeng, Yong Dou, Fei Xia, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

DFL-PiDA: Prediction of Piwi-interacting RNA-Disease Associations based on Deep Feature Learning.

Boya Ji, Jiawei Luo, Liangrui Pan, Xiaolan Xie, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer.

Shaoliang Peng, Xiaoyu Zhang, Wenhe Su, Dong Dong, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Joint consensus and diversity for multi-view semi-supervised classification.

Wenzhang Zhuge, Chenping Hou, Shaoliang Peng, Dongyun Yi

Mach. Learn., 2020

An efficient framework for generating robust adversarial examples.

Lili Zhang, Xiaoping Wang, Kai Lu, Shaoliang Peng, Xiaodong Wang

Int. J. Intell. Syst., 2020

A hybrid two-stage financial stock forecasting algorithm based on clustering and ensemble learning.

Ying Xu, Cuijuan Yang, Shaoliang Peng, Yusuke Nojima

Appl. Intell., 2020

Re-ranking Answer Selection with Similarity Aggregation.

Dong Chen, Shaoliang Peng, Kenli Li, Ying Xu, Jinling Zhang, Xiaolan Xie

Proceedings of the 43rd International ACM SIGIR conference on research and development in Information Retrieval, 2020

A Dynamic Protection Mechanism for GPU Memory Overflow.

Yaning Yang, Xiaoqi Wang, Shaoliang Peng

Proceedings of the Network and Parallel Computing, 2020

A Review on Scalability of Blockchain.

Di Yang, Chengnian Long, Han Xu, Shaoliang Peng

Proceedings of the ICBCT'20: The 2nd International Conference on Blockchain Technology, 2020

Blockchain for Data Science.

Jiameng Liu, Shaoliang Peng, Chengnian Long, Lijun Wei, Yunhao Liu, Zhihui Tian

Proceedings of the ICBCT'20: The 2nd International Conference on Blockchain Technology, 2020

A deep metric learning algorithm for similarity measure of the gene expression profile.

Shaoliang Peng, Lei Zhang, Yaning Yang, Wei Liu, Fei Li, Hao Hong, Kenli Li, Shulin Wang

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

Multi-View Weighted Feature Fusion Using CNN for Pneumonia Detection on Chest X-Rays.

Shaoliang Peng, Xiongjun Zhao, Xiaoyong Wei, Donqing Wei, Yuehua Peng

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

Efficiently recognition of vaginal micro-ecological environment based on Convolutional Neural Network.

Shaoliang Peng, Hao Huang, Minxia Cheng, Yaning Yang, Fei Li

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

GeoAI-based Epidemic Control with Geo-Social Data Sharing on Blockchain.

Shaoliang Peng, Liang Bai, Li Xiong, Qiang Qu, Xiaolan Xie, Shulin Wang

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

Predicting functional elements and variants effects in non-coding regions based on deep learning.

Yunhao Liu, Shaoliang Peng, Wenjie Shu, Bin Jiang, Chao Yang, Kun Xie

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

Segmented Encryption: A Quality and Safety Supervisory Model for Herbal Medicine Based on Blockchain Technology.

Jiameng Liu, Shaoliang Peng, Jiawei Luo, Zhuo Tang, Hao Liu

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

A drug information embedding method based on graph convolution neural network.

Xiaoyi Feng, Shaoliang Peng, Fei Li, Ying Xu, Xiangxiang Zeng, Dong-Qing Wei, Yunhao Liu

Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020

Predicting Drugs for COVID-19/SARS-CoV-2 via Heterogeneous Graph Attention Networks.

Yahui Long, Yu Zhang, Min Wu, Shaoliang Peng, Chee Keong Kwoh, Jiawei Luo, Xiaoli Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Predicting CRISPR-Cas9 Off-target with Self-supervised Neural Networks.

Dong Chen, Wenjie Shu, Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

A Latency-Aware Multiple Data Replicas Placement Strategy for Fog Computing.

Tiansheng Huang, Weiwei Lin, Yin Li, Ligang He, Shaoliang Peng

J. Signal Process. Syst., 2019

A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer.

Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Academic research trend analysis based on big data technology.

Weiwei Lin, Zilong Zhang, Shaoliang Peng

Int. J. Comput. Sci. Eng., 2019

Voluntary Vaccination through Perceiving Epidemic Severity in Social Networks.

Benyun Shi, Guangliang Liu, Hongjun Qiu, Yu-Wang Chen, Shaoliang Peng

Complex., 2019

DMCM: a Data-adaptive Mutation Clustering Method to identify cancer-related mutation clusters.

Xinguo Lu, Xin Qian, Xing Li, Qiumai Miao, Shaoliang Peng

Bioinform., 2019

LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs.

Gaole An, Jiaqi Sun, Chao Ren, Zhangyi Ouyang, Lingyun Zhu, Xiaochen Bo, Shaoliang Peng, Wenjie Shu

Database J. Biol. Databases Curation, 2019

XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters.

Zekun Yin, Hao Zhang, Kai Xu, Yuandong Chan, Shaoliang Peng, Xiaoning Wang, Bertil Schmidt, Weiguo Liu

Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019

A General Fine-tuned Transfer Learning Model for Predicting Clinical Task Acrossing Diverse EHRs Datasets.

Zhe Sun, Shaoliang Peng, Yaning Yang, Xiaoqi Wang, Fei Li

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

LysoPhD: predicting functional prophages in bacterial genomes from high-throughput sequencing.

Qi Niu, Shaoliang Peng, Xiang-Li-Lan Zhang, Shuai Cheng Li, Ying Xu, Xiang-Cheng Xie, Yi-Gang Tong

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

vGuard: A Spatiotemporal Efficiency Supervision Method For Vaccine Production Based On Double-level Blockchain.

Xing Hu, Shaoliang Peng, Chengnian Long, Hongbo Jiang, Lijun Wei

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

ConfVD: System Reactions Analysis and Evaluation Through Misconfiguration Injection.

Shanshan Li, Wang Li, Xiangke Liao, Shaoliang Peng, Shulin Zhou, Zhouyang Jia, Teng Wang

IEEE Trans. Reliab., 2018

mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection.

Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao

IEEE Trans. Parallel Distributed Syst., 2018

cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining.

Shunyun Yang, Runxin Guo, Rui Liu, Xiangke Liao, Quan Zou, Benyun Shi, Shaoliang Peng

BMC Bioinform., 2018

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.

Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi

BMC Bioinform., 2018

2017

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.

Wenhe Su, Xiangke Liao, Yutong Lu, Quan Zou, Shaoliang Peng

J. Comput. Biol., 2017

P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool.

Shaoliang Peng, Shunyun Yang, Ming Gao, Xiangke Liao, Jie Liu, Canqun Yang, Chengkun Wu, Wenqiang Yu

BMC Genom., 2017

mD3DOCKxb: An Ultra-Scalable CPU-MIC Coordinated Virtual Screening Framework.

Shaoliang Peng, Xiaoyu Zhang, Shunyun Yang, Wenhe Su, Zhiqiang Zhang, Dong Dong, Kai Lu, Yutong Lu, Xiangke Liao, Bertil Schmidt, Weiliang Zhu, Kuan-Ching Li

Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

A novel algorithm for detecting co-evolutionary domains in protein and nucleotide sequences.

Xiaoyu Zhang, Xiangke Liao, Hao Zhu, Kenli Li, Benyun Shi, Shaoliang Peng

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.

Haidong Lan, Yuandong Chan, Kai Xu, Bertil Schmidt, Shaoliang Peng, Weiguo Liu

BMC Bioinform., 2016

mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer.

Shaoliang Peng, Xiaoyu Zhang, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

High performance computational biology and drug design on TianHe Supercomputers.

Shaoliang Peng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer.

Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen

Supercomput. Front. Innov., 2015

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing.

Ettore Murabito, Riccardo Colombo, Chengkun Wu, Malkhey Verma, Samrina Rehman, Jacky L. Snoep, Shaoliang Peng, Naiyang Guan, Xiangke Liao, Hans V. Westerhoff

Quant. Biol., 2015

HeMatch: A redundancy layout placement scheme for erasure-coded storages in practical heterogeneous failure patterns.

Jing Zhang, Shanshan Li, Xiangke Liao, Shaoliang Peng, Xiaodong Liu, Zhouyang Jia

Sci. China Inf. Sci., 2015

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam

BMC Bioinform., 2015

BWTCP: A Parallel Method for Constructing BWT in Large Collection of Genomic Reads.

Heng Wang, Shaoliang Peng, Yutong Lu, Chengkun Wu, Jiajun Wen, Jie Liu, Xiaoqian Zhu

Proceedings of the High Performance Computing - 30th International Conference, 2015

Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2.

Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu

Proceedings of the High Performance Computing - 30th International Conference, 2015

A Method to Accelerate GROMACS in Offload Mode on Tianhe-2 Supercomputer.

Haiqiang Wang, Shaoliang Peng, Xiaoqian Zhu, Chengkun Wu, Xin Liu, Qian Chen, Weiliang Zhu, Jinan Wang, Huaiyu Yang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer.

Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

mAMBER: Accelerating Explicit Solvent Molecular Dynamic with Intel Xeon Phi Many-Integrated Core Coprocessors.

Xin Liu, Shaoliang Peng, Canqun Yang, Chengkun Wu, Haiqiang Wang, Qian Cheng, Weiliang Zhu, Jinan Wang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors.

Qian Cheng, Shaoliang Peng, Yutong Lu, Weiliang Zhu, Zhijian Xu, Xinben Zhang

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014

Know by a handful the whole sack: efficient sampling for top-k influential user identification in large graphs.

Xiaodong Liu, Shanshan Li, Xiangke Liao, Shaoliang Peng, Lei Wang, Zhiyin Kong

World Wide Web, 2014

IMGPU: GPU-Accelerated Influence Maximization in Large-Scale Social Networks.

Xiaodong Liu, Mo Li, Shanshan Li, Shaoliang Peng, Xiangke Liao, Xiaopei Lu

IEEE Trans. Parallel Distributed Syst., 2014

MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC).

Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam

CoRR, 2014

mBWA: A Massively Parallel Sequence Reads Aligner.

Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2013

INCOME: Practical land monitoring in precision agriculture with sensor networks.

Shanshan Li, Shaoliang Peng, Weifeng Chen, Xiaopei Lu

Comput. Commun., 2013

The architecture and traffic management of wireless collaborated hybrid data center network.

He Huang, Xiangke Liao, Shanshan Li, Shaoliang Peng, Xiaodong Liu, Bin Lin

Proceedings of the ACM SIGCOMM 2013 Conference, 2013

2012

Fast Release/Capture Sampling in Large-Scale Sensor Networks.

Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng

IEEE Trans. Mob. Comput., 2012

A scalable code dissemination protocol in heterogeneous wireless sensor networks.

Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Nong Xiao

Sci. China Inf. Sci., 2012

HLA-Based Parallel Simulation: A Case Study.

Buquan Liu, Yiping Yao, Zhiwen Jiang, Laibin Yan, Qingjun Qu, Shaoliang Peng

Proceedings of the 26th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation, 2012

2011

Empirical Study on Entity Interaction Graph of Large-Scale Parallel Simulations.

Bonan Hou, Yiping Yao, Shaoliang Peng

Proceedings of the 25th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation, 2011

A Well-Balanced Time Warp System on Multi-Core Environments.

Li-li Chen, Ya-Shuai Lü, Yi-Ping Yao, Shaoliang Peng, Ling-Da Wu

Proceedings of the 25th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation, 2011

2010

Fish a lake: Fast release/capture sampling in large-scale sensor networks.

Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng

Proceedings of the 18th International Workshop on Quality of Service, 2010

MPIActor: A thread-based MPI program accelerator.

Zhiqiang Liu, Junqiang Song, Shaoliang Peng

Proceedings of the 18th International Workshop on Quality of Service, 2010

Exploring the practicability of mobile sensors in complex environment surveillance.

Shanshan Li, Si Zheng, Xiangke Liao, Shaoliang Peng

Proceedings of the 18th International Workshop on Quality of Service, 2010

2009

Fast summation via sampling in large-scale sensor networks.

Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng

ACM SIGMOBILE Mob. Comput. Commun. Rev., 2009

Estimation of a Population Size in Large-Scale Wireless Sensor Networks.

Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Nong Xiao

J. Comput. Sci. Technol., 2009

EDEVS : A Scalable DEVS Formalism for Event-Scheduling Based Parallel and Distributed Simulations.

Gang Liu, Yiping Yao, Shaoliang Peng

Proceedings of the 13th IEEE/ACM International Symposium on Distributed Simulation and Real Time Applications, 2009

2008

Scalable Base-Station Model-Based Multicast in Wireless Sensor Networks.

Shaoliang Peng, Shanshan Li, Lei Chen, Yuxing Peng, Nong Xiao

J. Comput. Sci. Technol., 2008

Using cable-based mobile sensors to assist environment surveillance.

Shanshan Li, Shaoliang Peng, Mo Li, Xiangke Liao

Proceedings of the IEEE 5th International Conference on Mobile Adhoc and Sensor Systems, 2008

Barrier Coverage with Mobile Sensors.

Changxiang Shen, Wei-Fang Cheng, Xiangke Liao, Shaoliang Peng

Proceedings of the 9th International Symposium on Parallel Architectures, 2008

SenCast: Scalable multicast in wireless sensor networks.

Shaoliang Peng, Shanshan Li, Lei Chen, Nong Xiao, Yuxing Peng

Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

2007

Real-Time Data Delivery in Wireless Sensor Networks: A Data-Aggregated, Cluster-Based Adaptive Approach.

Shaoliang Peng, Shanshan Li, Yuxing Peng, Wen-sheng Tang, Nong Xiao

Proceedings of the Ubiquitous Intelligence and Computing, 4th International Conference, 2007

Credit based Fairness Control in Wireless Sensor Network.

Shanshan Li, Xiangke Liao, Shaoliang Peng, Peidong Zhu, Jie Jiang

Proceedings of the 8th ACIS International Conference on Software Engineering, 2007

A Framework for Congestion Control for Reliable Data Delivery in Wireless Sensor Networks.

Shanshan Li, Shaoliang Peng, Xiangke Liao, Peidong Zhu, Yuxing Peng

Proceedings of the Integrated Network Management, 2007

A Delay Sensitive Feedback Control Data Aggregation Approach in Wireless Sensor Network.

Shaoliang Peng, Shan-shan Li, Yuxing Peng, Peidong Zhu, Nong Xiao

Proceedings of the Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27, 2007

2006

Path Selection of Reliable Data Delivery in Wireless Sensor Networks.

Xiangke Liao, Shanshan Li, Peidong Zhu, Shaoliang Peng, Wei-Fang Cheng, Dezun Dong

Proceedings of the Wireless Algorithms, 2006

A Trust-Based Routing Framework in Energy-Constrained Wireless Sensor Networks.

Wei-Fang Cheng, Xiangke Liao, Changxiang Shen, Shanshan Li, Shaoliang Peng

Proceedings of the Wireless Algorithms, 2006

Feedback Control with Prediction for Thread Allocation in Pipeline Architecture Web Server.

Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Ye Hui

Proceedings of the Distributed Computing and Networking, 8th International Conference, 2006

Energy Efficient Multipath Routing Using Network Coding in Wireless Sensor Networks.

Shanshan Li, Peidong Zhu, Xiangke Liao, Wei-Fang Cheng, Shaoliang Peng

Proceedings of the Ad-Hoc, Mobile, and Wireless Networks, 5th International Conference, 2006