Yingfan Ma

According to our database, Yingfan Ma authored at least 22 papers between 2021 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Enhancing Protein Structure Learning Using a Size-Guided Conditional Mixture-of-Experts.

Mingzhi Yuan, Ao Shen, Siqi Yin, Yingfan Ma, Qiao Huang, Manning Wang

IEEE J. Biomed. Health Informatics, April, 2026

Can LLMs Learn to Reason Robustly under Noisy Supervision?

Shenzhi Yang, Guangcheng Zhu, Bowen Song, Sharon Li, Haobo Wang, Xing Zheng, Yingfan Ma, Zhongqi Chen, Weiqiang Wang, Gang Chen

CoRR, April, 2026

Towards General Protein Structure Representation Learning With a Protein Size Prompt.

Ao Shen, Mingzhi Yuan, Yingfan Ma, Qiao Huang, Jie Du, Zhijuan Cao, Manning Wang

IEEE Trans. Artif. Intell., February, 2026

Boosting 3-D Point Cloud Registration by Orthogonal Self-Ensemble Learning.

Mingzhi Yuan, Ao Shen, Yingfan Ma, Jie Du, Qiao Huang, Manning Wang

IEEE Trans. Artif. Intell., January, 2026

2025

TraPO: A Semi-Supervised Reinforcement Learning Framework for Boosting LLM Reasoning.

Shenzhi Yang, Guangcheng Zhu, Xing Zheng, Yingfan Ma, Zhongqi Chen, Bowen Song, Weiqiang Wang, Junbo Zhao, Gang Chen, Haobo Wang

CoRR, December, 2025

ABench-Physics: Benchmarking Physical Reasoning in LLMs via High-Difficulty and Dynamic Physics Problems.

Yiming Zhang, Yingfan Ma, Yanmei Gu, Zhengkai Yang, Yihong Zhuang, Feng Wang, Zenan Huang, Yuanyuan Wang, Chao Huang, Bowen Song, Cheng Lin, Junbo Zhao

CoRR, July, 2025

ProteinF3S: boosting enzyme function prediction by fusing protein sequence, structure, and surface.

Mingzhi Yuan, Ao Shen, Yingfan Ma, Jie Du, Bohan An, Manning Wang

Briefings Bioinform., January, 2025

SeLa-MIL: Developing an instance-level classifier via weakly-supervised self-training for whole slide image classification.

Yingfan Ma, Mingzhi Yuan, Ao Shen, Xiaoyuan Luo, Bohan An, Xinrong Chen, Manning Wang

Comput. Methods Programs Biomed., 2025

Knowledge-Guided Multi-scale Graph Mamba for Whole Slide Image Classification.

Minghong Duan, Zhiwei Yang, Yingfan Ma, Manning Wang, Zhijian Song

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2025, 2025

Drug-TTA: Test-Time Adaptation for Drug Virtual Screening via Multi-task Meta-Auxiliary Learning.

Ao Shen, Mingzhi Yuan, Yingfan Ma, Jie Du, Qiao Huang, Manning Wang

Proceedings of the Forty-second International Conference on Machine Learning, 2025

Flow-MIL: Constructing Highly-expressive Latent Feature Space for Whole Slide Image Classification using Normalizing Flow.

Yingfan Ma, Bohan An, Ao Shen, Mingzhi Yuan, Minghong Duan, Manning Wang

Proceedings of the IEEE/CVF International Conference on Computer Vision, 2025

2024

Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier Is All You Need.

Linhao Qu, Yingfan Ma, Xiaoyuan Luo, Qinhao Guo, Manning Wang, Zhijian Song

IEEE Trans. Circuits Syst. Video Technol., October, 2024

SS-Pro: a simplified Siamese contrastive learning approach for protein surface representation.

Ao Shen, Mingzhi Yuan, Yingfan Ma, Manning Wang

Frontiers Comput. Sci., October, 2024

PGBind: pocket-guided explicit attention learning for protein-ligand docking.

Ao Shen, Mingzhi Yuan, Yingfan Ma, Jie Du, Manning Wang

Briefings Bioinform., September, 2024

Complementary multi-modality molecular self-supervised learning via non-overlapping masking for property prediction.

Ao Shen, Mingzhi Yuan, Yingfan Ma, Jie Du, Manning Wang

Briefings Bioinform., July, 2024

Rethinking Multiple Instance Learning: Developing an Instance-Level Classifier via Weakly-Supervised Self-Training.

Yingfan Ma, Xiaoyuan Luo, Mingzhi Yuan, Xinrong Chen, Manning Wang

CoRR, 2024

Transformer-Based Video-Structure Multi-Instance Learning for Whole Slide Image Classification.

Yingfan Ma, Xiaoyuan Luo, Kexue Fu, Manning Wang

Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023

ProteinMAE: masked autoencoder for protein surface self-supervised learning.

Mingzhi Yuan, Ao Shen, Kexue Fu, Jiaming Guan, Yingfan Ma, Qin Qiao, Manning Wang

Bioinform., December, 2023

Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need.

Linhao Qu, Yingfan Ma, Xiaoyuan Luo, Manning Wang, Zhijian Song

CoRR, 2023

OpenAL: An Efficient Deep Active Learning Framework for Open-Set Pathology Image Classification.

Linhao Qu, Yingfan Ma, Zhiwei Yang, Manning Wang, Zhijian Song

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Boosting Whole Slide Image Classification from the Perspectives of Distribution, Correlation and Magnification.

Linhao Qu, Zhiwei Yang, Minghong Duan, Yingfan Ma, Shuo Wang, Manning Wang, Zhijian Song

Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2021

Mining frequent pyramid patterns from time series transaction data with custom constraints.

Wei Wang, Jing Tian, Fang Lv, Guodong Xin, Yingfan Ma, Bailing Wang

Comput. Secur., 2021